PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G18670.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 400aa MW: 42525.9 Da PI: 8.5485

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G18670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	194.8	3.1e-60	63	209	5	149
DUF822 5 rkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslqs 96 + ++ ErEnn+rRERrRRaiaakiyaGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e+++ +g+sas sp+ss+q OMERI06G18670.1 63 KAKPVWERENNRRRERRRRAIAAKIYAGLRAYGNYNLPKHCDNNEVLKALCHEAGWTVEPDGTTYRKGCKPPqaERPDPIGRSASPSPCSSYQ- 155 566777***************************************************************99999*************. PP DUF822 97 slkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvsss 149 +sp++sy++sp+sssfps+ s+++i++ + +sl+p+l++l+l+ss OMERI06G18670.1 156 -------PSPRASYNPSPASSSFPSSGSSSHITIGGNnliggvegSSLIPWLKTLPLSSSY 209 .......***********************98899*99*****99987775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.5E-66	63	203	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MAAGRSRQLG GAGAGTGRGA PGSLAKSWRE AERRARVESC DGGGEERRDE KRRGGGEYDG 60 DEKAKPVWER ENNRRRERRR RAIAAKIYAG LRAYGNYNLP KHCDNNEVLK ALCHEAGWTV 120 EPDGTTYRKG CKPPQAERPD PIGRSASPSP CSSYQPSPRA SYNPSPASSS FPSSGSSSHI 180 TIGGNNLIGG VEGSSLIPWL KTLPLSSSYA PSSKFPQLHH LYFNGGSISA PVTPPSSSPT 240 RTPRLRTDWE NASVQPPWAS ANYTSLPNST PPSPGHKIAP DPAWLAGFQI SSAGPSSPTY 300 NLVSPNPFGI FKEAIASTSR VCTPGQSGTC SPVMGGMPAH HDVQMVDGAP DDFAFGSSSN 360 GNNESPGLVK AWEGERIHEE CASDELELTL GSSKTRADPS

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MAAGRSRQLG GAGAGTGRGA PGSLAKSWRE AERRARVESC DGGGEERRDE KRRGGGEYDG  60
DEKAKPVWER ENNRRRERRR RAIAAKIYAG LRAYGNYNLP KHCDNNEVLK ALCHEAGWTV  120
EPDGTTYRKG CKPPQAERPD PIGRSASPSP CSSYQPSPRA SYNPSPASSS FPSSGSSSHI  180
TIGGNNLIGG VEGSSLIPWL KTLPLSSSYA PSSKFPQLHH LYFNGGSISA PVTPPSSSPT  240
RTPRLRTDWE NASVQPPWAS ANYTSLPNST PPSPGHKIAP DPAWLAGFQI SSAGPSSPTY  300
NLVSPNPFGI FKEAIASTSR VCTPGQSGTC SPVMGGMPAH HDVQMVDGAP DDFAFGSSSN  360
GNNESPGLVK AWEGERIHEE CASDELELTL GSSKTRADPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-23	82	133	391	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-23	82	133	391	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-23	82	133	391	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-23	82	133	391	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101229	0.0	AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641160.1	0.0	protein BZR1 homolog 3
Swissprot	Q5Z9E5	0.0	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A0E0E2S9	0.0	A0A0E0E2S9_9ORYZ; Uncharacterized protein
STRING	OMERI06G17170.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	3e-64	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]