PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G19340.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 536aa    MW: 55954.4 Da    PI: 7.0372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G19340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.6e-15344390554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+riN++f++Lr llP +   p+ K +Ka++L  ++eY+ +L
  OMERI06G19340.1 344 HMISERRRRERINDSFQTLRALLPLP---PDSKKDKAAVLATTTEYMDKL 390
                      8899**********************...*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-17330401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.707339390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-16343402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-12344390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13345396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.15E-7354390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MDAIFALPPD ARARAMERAA ARLPGCLYLC LWAPAAAIAG GVQPNHLFCL DAWIGVAGGG  60
GDGGGGGDRA LELFEAYRGA LCAAVSGCVP GWAYKEGAAC MELTKHHLAA SASLQVQQQF  120
YHESGTKMAV FMGCDSGEIE VGLSAASATA TAMAAAAVVG EMQQSILEEL LQMPPPPSSS  180
SSSLLSLSVG SPEYSSLVRS MATSVGASAA AEPSPVHGGL LAPVYGEFPG SDDDAAMAQA  240
MLEVISTPAP PPPPWRPPRR RARSSSSPRR ATAFKAYNAA LSPRARPRPG APGQRMIKTG  300
ISLLASVHMQ TRSRELAAAR QRDTHAAPPP PPPPPPPSSS QLHHMISERR RRERINDSFQ  360
TLRALLPLPP DSKKDKAAVL ATTTEYMDKL ISQVSELEAQ LATRSGEARW PDASGGDGGG  420
GESSSERVQV DVVIAGSSTS TDHAREVSIR VTVRAECDVS ELVVAVLARL REMDRFAVVS  480
VDAGRRSSSF AQASLTLRVM AGDVRDETSL KEAVAKAVDS AVTAQPVAPP PPPASP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257263PRRRARS
2347352ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054600.0AP005460.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0610D01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882299.10.0putative transcription factor bHLH041
TrEMBLA0A0E0E3200.0A0A0E0E320_9ORYZ; Uncharacterized protein
STRINGOS06T0570900-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-17bHLH family protein