PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G20820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 548aa    MW: 60326.3 Da    PI: 8.9389
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G20820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-09309355652
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      +++k qle+Le+++ +++ p+ +++  + + ++L+ + +  WF  rR
  OMERI06G20820.1 309 RLKKVQLETLERVYSRTKRPTNTMISSIVQVTNLPRKTIVKWFEDRR 355
                      67899*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.28E-6304355No hitNo description
SuperFamilySSF466895.99E-9307361IPR009057Homeodomain-like
SMARTSM003890.0013307365IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-9308357IPR009057Homeodomain-like
PfamPF000467.0E-7309355IPR001356Homeobox domain
PROSITE profilePS500719.41314361IPR001356Homeobox domain
PfamPF156971.0E-42404536IPR031421Protein of unknown function DUF4666
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MAAMVGAPLA VAAAAAAPGA RVFLARPLLR RSPRGVACAL RRRPSKYKKW ERKYPKRELA  60
EMAAMVGAPL AVAAAAAAPG ARVFLARPLL RRSPRGVACA LRRRPSKYKN KIQNEEVVAE  120
DDIGGGGEDD DDALEALFKQ LEEDLKNDDL SVEDDDDGIS EEDMARFEQE LAEAIGDIAD  180
ADESAEGSSL GSEAYGNDEK TDEIKRPELK NWQLKRLARA LKIGRRKTSI KNLAGEIGLD  240
RTLVIELLRN PPPKLLFMSD SLPDEDPSKP EIKEIEPCPV VDNADITETK PQTELPVHVM  300
CAEWSSQKRL KKVQLETLER VYSRTKRPTN TMISSIVQVT NLPRKTIVKW FEDRREHDGM  360
EKFRSSSEGN HVETGEGGSI WGPARLQHSD SERGVVVVLV VQMMAGLQRS ATTFRRSGSS  420
GLVWDERFLT EDAEAAKAGD GDGGGGTEEP QPELRHSKSV GSIGMMRRVA ADDRDDSKKT  480
TKQQRKKKKK DGQKEDDNRS QQVFRTKDIA PDVDPPSPRV SGCILCSIFS GSGSSAAAKS  540
RRAKPRKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1484490RKKKKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713300.0AK071330.1 Oryza sativa Japonica Group cDNA clone:J023089G15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643619.11e-175protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A0E0E3K90.0A0A0E0E3K9_9ORYZ; Uncharacterized protein
STRINGOMERI06G19260.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107003542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-54overexpressor of cationic peroxidase 3