PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G22190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 449aa    MW: 48445.9 Da    PI: 7.8402
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G22190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-1894143155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  OMERI06G22190.1  94 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 143
                      78*******************......55************************997 PP
2AP240.57e-13186234153
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      s+++GV+ +k  g+W+A+I         +k+++lg ++t+ eAaka+++a+ k 
  OMERI06G22190.1 186 SRFRGVTLHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAKAYDKAAIKC 234
                      789*******.7******77733....25**********77*********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-1094143IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1594152IPR016177DNA-binding domain
PROSITE profilePS5103217.68895151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1795151IPR001471AP2/ERF domain
SMARTSM003801.7E-3195157IPR001471AP2/ERF domain
PfamPF008479.7E-9186236IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-17186245IPR016177DNA-binding domain
CDDcd000183.41E-23186246No hitNo description
PROSITE profilePS5103214.789187244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-17187245IPR001471AP2/ERF domain
SMARTSM003802.1E-32187250IPR001471AP2/ERF domain
PRINTSPR003672.1E-5188199IPR001471AP2/ERF domain
PRINTSPR003672.1E-5226246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAATFYGVGS IALAMHEDDE VEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAAAVVPEST  60
EQRHVAAAAV AAGAEQWARP PSRKTRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  120
LGGFDTAQAA ARAYDQAAIK FRGVEADINF TLDDYKEDIK KMNNFSKEEF VQVLRRQGAG  180
FVRGSSRFRG VTLHKCGKWE ARIGQLMGKK YVYLGLYDTE MEAAKAYDKA AIKCCGKEAV  240
TNFDTQAYED ELNLQSWDSE LDLELSLGCS GGERAAGDPA AAVEVLHSAP SNQRTSLTFM  300
LPEEEEMTAC HRQRSIWARP SLAPAMPDGG AVIRPDQHQH HPSSRNMLLM SQVISSSGGG  360
GGSGRQGAAE LHMRPRHGWS NGGNNWAQPY AARPRLPGAE DDDDDSAAAA SSGFPMGQVA  420
TASSSSRPSS SSCSSSRRSS TATATATGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429570.0AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642711.10.0ethylene-responsive transcription factor RAP2-7
SwissprotA0A0N7KMH00.0AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A0E0E4530.0A0A0E0E453_9ORYZ; Uncharacterized protein
STRINGORUFI06G23930.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.25e-86AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]