PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G22680.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 318aa    MW: 34783.1 Da    PI: 6.4498
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G22680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072612942154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  OMERI06G22680.1 261 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 294
                      569*****************************87 PP
2ELK29.31.9e-10215236122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++L+++++E++
  OMERI06G22680.1 215 ELKHELKQGYREKLVDIREEIL 236
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194488IPR005540KNOX1
PfamPF037901.5E-164784IPR005540KNOX1
SMARTSM012569.4E-2598153IPR005541KNOX2
PfamPF037916.6E-17106152IPR005541KNOX2
SMARTSM011880.0014215236IPR005539ELK domain
PROSITE profilePS5121310.196215235IPR005539ELK domain
PfamPF037892.9E-6215236IPR005539ELK domain
PROSITE profilePS5007111.596235298IPR001356Homeobox domain
SuperFamilySSF466891.15E-15237302IPR009057Homeodomain-like
SMARTSM003893.3E-10237302IPR001356Homeobox domain
CDDcd000864.03E-11238299No hitNo description
Gene3DG3DSA:1.10.10.602.4E-24242299IPR009057Homeodomain-like
PfamPF059203.4E-18255294IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAFHYQDHAL AMDAAAAAAA ETGGHHHPGF VGAGGVVGGG GGWEREKAAI AAHPLYERLL  60
EAHVACLRVA TPVDQLPRID AQIAARPPPL AAAAAAAAGG APSGGEELDL FMTHYVLLLC  120
SFKEQLQQHV RVHAMEAVMA CWELEQTLQS LTVVTLTAGA SPGEGSGATM SDDEDNQVDS  180
ESNMFDGNDG SDGMGFGPLM LTEGERSLVE RVRQELKHEL KQGYREKLVD IREEILRKRR  240
AGKLPGDTAS TLKAWWQAHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP  300
ASSSSDKSKR KRYRVVDF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291311RKRNWHSNPASSSSDKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0618180.0AB061818.1 Oryza sativa Japonica Group HOS59 mRNA for KNOX family class 2 homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965738.11e-173homeobox protein knotted-1-like 11 isoform X2
SwissprotQ0E3C31e-172KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A0E0E4D00.0A0A0E0E4D0_9ORYZ; Uncharacterized protein
STRINGPavir.J37473.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-133KNOTTED1-like homeobox gene 3