PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G24090.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 211aa    MW: 22450.4 Da    PI: 7.8538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G24090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.7e-142976254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     rr+h+e+Er+RR+riN  +++Lr l+P+a      +++Ka+ L ++v+Y+++L
  OMERI06G24090.1 29 RRSHSEAERKRRERINAHLDTLRGLVPSA-----SRMDKAALLGEVVRYVREL 76
                     99**************************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-152678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-152778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.1112776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-122976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-113177No hitNo description
SMARTSM003535.8E-123382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.2E-4117168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVAARSGDDA ELGLDVECLA AAARRTRARR SHSEAERKRR ERINAHLDTL RGLVPSASRM  60
DKAALLGEVV RYVRELRSDA AGSAVVVPGE GDEVVVEEEE GCSCDAGERR QARRVKASVC  120
CADRPGLMSE LGDAARSVSA RAVRAEIATV GGRTRSVLEL DVARTAAAAA GGGSFSQLPA  180
LQAALRAVIM SQEELLAVES YKRLRFSADF A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057551e-180AP005755.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14.
GenBankAP0149651e-180AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661325.14e-76PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0E0E5081e-141A0A0E0E508_9ORYZ; Uncharacterized protein
STRINGOBART09G13210.11e-113(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-14bHLH family protein