PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G24380.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22518.6 Da    PI: 5.1564
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G24380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.45.9e-21946138
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                     krie+ ++rqvtfskRr+g lKKA+EL vLCda+v v+
  OMERI06G24380.1  9 KRIEDATRRQVTFSKRRAGFLKKAHELAVLCDAQVGVV 46
                     79*********************************998 PP
2K-box61.63.1e-21471311699
            K-box  16 slqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++  e+++L++ei++L+  +R+  GedL+s  ++ eL qL+ qLe+sl+k+ ++K+el+ +q+e+++++ + ++e+n+ L +++ 
  OMERI06G24380.1  47 QMVMEITRLRNEIDQLEAGLRRQTGEDLSSVaTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMMS 131
                      6789**************************84689********************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-24154IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-21146IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.175146IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-15323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-181046IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-152338IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.62645136IPR002487Transcription factor, K-box
PfamPF014864.7E-2147130IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGKIEMKR IEDATRRQVT FSKRRAGFLK KAHELAVLCD AQVGVVQMVM EITRLRNEID  60
QLEAGLRRQT GEDLSSVATV DELSQLQLQL ESSLSKVHAR KDELMSQQLE DMRRMHQTVH  120
EQNNFLCRMM SENWQSPGSG EASAMEALTM LPAAAFNCFF PEEEEKGVAA SSTLLQLWPQ  180
PHDGDQPDLR LWYIEDR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1740931e-132AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882177.14e-75MADS-box transcription factor 30 isoform X7
SwissprotQ655V41e-76MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A0E0E5511e-144A0A0E0E551_9ORYZ; Uncharacterized protein
STRINGOS06T0667200-001e-117(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.26e-23MIKC_MADS family protein