PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G25120.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 283aa MW: 31354.3 Da PI: 5.1949

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G25120.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.7e-23	132	218	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGFs+rk + k+ + +++ + fvCs+eg++++++++ +++++ra+tr +C+a ++ + ++dg w v k+el HnH+l+ OMERI06G25120.1 132 DFYNAYARNVGFSIRKCHGKT-RPDKTLCAKYFVCSNEGQKSTHSTH--ETKKERASTRSSCQAFVRFTISRDGIWTVRKVELGHNHPLV 218 6************998666.5888899*********99887..999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-20	132	218	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MAVAMRVTAT HVQETDGGDD DTTTCVQERV AAAGSGDTDA RSNTAEIDGA SAAQIDHEAE 60 VLGPIDRDSR SNFTDDAMKD QATAHHQFSS DDENLEDCMN EENDFSVDEL TPASHNIPKT 120 GMTFKSENEA YDFYNAYARN VGFSIRKCHG KTRPDKTLCA KYFVCSNEGQ KSTHSTHETK 180 KERASTRSSC QAFVRFTISR DGIWTVRKVE LGHNHPLVSP DKSHISNTCP NNTMPARTNA 240 MQDSSLMFYP AVQGEFTNLL FQQHPETSGL IIPRRLDFDK STS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004000	1e-124	AP004000.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1115_B01.
GenBank	AP014958	1e-124	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0E5E7	0.0	A0A0E0E5E7_9ORYZ; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-17	FAR1 family protein