PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G26410.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 295aa    MW: 31927.4 Da    PI: 4.8192
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G26410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.2e-15256289132
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                      C++Cg     Tp++Rrgpdg++tLCnaCGl+++ 
  OMERI06G26410.1 256 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWAN 289
                      ****977777**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.975120155IPR010399Tify domain
SMARTSM009795.9E-11120155IPR010399Tify domain
PfamPF062003.2E-13123154IPR010399Tify domain
PfamPF062036.3E-16181223IPR010402CCT domain
PROSITE profilePS5101713.404181223IPR010402CCT domain
SMARTSM004012.6E-5250294IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-9254289No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13255290IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.64E-11255290No hitNo description
PROSITE patternPS003440256283IPR000679Zinc finger, GATA-type
PfamPF003202.2E-13256290IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERPP PPAPADDAAH VAPTVDHLAA VAAEAEAMAR YEEEHGALGA  60
EAEAEDEEEE DELEEEEEME EDEDAQHHEG GGELAVPMDA EAAAQMDPHG GMLAASAAVQ  120
PMASNQLTLS FQGEVYVFDS VSPDKVQAVL LLLGGRELNP GLGSGASSSA PYSKRLNFPH  180
RVASLMRFRE KRKERNFDKK IRYSVRKEVA LRMQRNRGQF TSSKPKGDEA TSELTASDGS  240
PNWGSVEGRP PSAAECHHCG INAKATPMMR RGPDGPRTLC NACGLMWANK VPINV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2433340.0AK243334.1 Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882282.11e-164GATA transcription factor 20
SwissprotQ5Z4U51e-165GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0E0E5X00.0A0A0E0E5X0_9ORYZ; Uncharacterized protein
STRINGOGLUM06G27650.11e-161(Oryza glumipatula)
STRINGOBART06G26250.11e-161(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-68ZIM-LIKE 2