PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G26660.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 1124aa MW: 124224 Da PI: 6.4725

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G26660.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.7	9.5e-23	119	220	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ OMERI06G26660.1 119 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 208 99***************************954.4444.49********************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ OMERI06G26660.1 209 EKQQLLLGIRRA 220 88889**997 PP
2	Auxin_resp	118	7.7e-39	245	328	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ OMERI06G26660.1 245 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 328 79********************************9*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	35	No hit	No description
SuperFamily	SSF101936	3.14E-43	108	248	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-41	111	234	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.46E-19	118	210	No hit	No description
PROSITE profile	PS50863	11.801	119	221	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-22	119	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-20	119	220	IPR003340	B3 DNA binding domain
Pfam	PF06507	1.5E-33	245	328	IPR010525	Auxin response factor
Pfam	PF02309	1.7E-9	988	1075	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	26.938	990	1074	IPR000270	PB1 domain
SuperFamily	SSF54277	4.32E-7	1002	1069	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1124 aa Download sequence Send to blast
MMKQAQQQQP PPASSAATTT AMAAAAAAAV VGSGCEGEKT KAPAINSELW HACAGPLVSL 60 PPAGSLVVYF PQGHSEQADP ETDEVYAQMT LQPVTSYGKE ALQLSELALK QARPQTEFFC 120 KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELQ ARDLHDNVWT FRHIYRGQPK 180 RHLLTTGWSL FVSGKRLFAG DSVIFVRDEK QQLLLGIRRA NRQPTNISSS VLSSDSMHIG 240 ILAAAAHAAA NNSPFTIFYN PRASPTEFVI PFAKYQKAVY GNQISLGMRF RMMFETEELG 300 TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VAAPFFICPP 360 PFFGAKRPRQ LDDESSEMEN LLKRAMPWLG EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ 420 SSSFANTAMQ SEYLRSLSNP NMQNLGAADL SRQLCLQNQL LQQNNIQFNT PKLSQQMQPV 480 NELAKAGIPL NQLGVSTKPQ EQIHDASNLQ RQQPSMNHML PLSQAQTSLG QAQVLVQNQM 540 QQQHASSTQG QQPATSQPLL LPQQQQQQQQ QQQQQQQQQQ KLLQQQQQQL LLQQQQQLSK 600 MPAQLSSLAN QQFQLTDQQL QLQLLQKLQQ QQQSLLSQPA VTLAQLPLIQ EQQKLLLDMQ 660 QQLSNSQTLS QQQMMPQQST KVPSQNTPLP LPVQQEPQQK LLQKQAMLAD TSEAAVPPTT 720 SVNVISTTGS PLMTIGATHS VLTEEIPSCS TSPSTANGNR LLQPILGRNK HCSMINTEKV 780 PQSAAPMSVP SSLEAVTATP RMIKDSPKLN HSVKQSVVAS KLANAGTGSQ NYVNNPPPTD 840 YLETASSATS VWLSQNDGLL HQNFPMSNFN QPQMFKDAPP DAEIHAANTS NNALFGINGD 900 GPLGFPIGLG TDDFLSNGID AAKYENHIST EIDNSYRIPK DAQQEISSSM VSQSFGASDM 960 AFNSIDSTIN DGGFLNRSSW PPAAPLKRMR TFTKVYKRGA VGRSIDMSQF SGYDELKHAL 1020 ARMFSIEGQL EERQRIGWKL VYKDHEDDIL LLGDDPWEEF VGCVKCIRIL SPQEVQQMSL 1080 EGCDLGNNIP PNQACSSSDG GNAWRARCDQ NSGNPSNGSY EQFE

Sequence ? help Back to Top

Protein Sequence Length: 1124 aa Download sequence Send to blast

MMKQAQQQQP PPASSAATTT AMAAAAAAAV VGSGCEGEKT KAPAINSELW HACAGPLVSL  60
PPAGSLVVYF PQGHSEQADP ETDEVYAQMT LQPVTSYGKE ALQLSELALK QARPQTEFFC  120
KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELQ ARDLHDNVWT FRHIYRGQPK  180
RHLLTTGWSL FVSGKRLFAG DSVIFVRDEK QQLLLGIRRA NRQPTNISSS VLSSDSMHIG  240
ILAAAAHAAA NNSPFTIFYN PRASPTEFVI PFAKYQKAVY GNQISLGMRF RMMFETEELG  300
TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VAAPFFICPP  360
PFFGAKRPRQ LDDESSEMEN LLKRAMPWLG EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ  420
SSSFANTAMQ SEYLRSLSNP NMQNLGAADL SRQLCLQNQL LQQNNIQFNT PKLSQQMQPV  480
NELAKAGIPL NQLGVSTKPQ EQIHDASNLQ RQQPSMNHML PLSQAQTSLG QAQVLVQNQM  540
QQQHASSTQG QQPATSQPLL LPQQQQQQQQ QQQQQQQQQQ KLLQQQQQQL LLQQQQQLSK  600
MPAQLSSLAN QQFQLTDQQL QLQLLQKLQQ QQQSLLSQPA VTLAQLPLIQ EQQKLLLDMQ  660
QQLSNSQTLS QQQMMPQQST KVPSQNTPLP LPVQQEPQQK LLQKQAMLAD TSEAAVPPTT  720
SVNVISTTGS PLMTIGATHS VLTEEIPSCS TSPSTANGNR LLQPILGRNK HCSMINTEKV  780
PQSAAPMSVP SSLEAVTATP RMIKDSPKLN HSVKQSVVAS KLANAGTGSQ NYVNNPPPTD  840
YLETASSATS VWLSQNDGLL HQNFPMSNFN QPQMFKDAPP DAEIHAANTS NNALFGINGD  900
GPLGFPIGLG TDDFLSNGID AAKYENHIST EIDNSYRIPK DAQQEISSSM VSQSFGASDM  960
AFNSIDSTIN DGGFLNRSSW PPAAPLKRMR TFTKVYKRGA VGRSIDMSQF SGYDELKHAL  1020
ARMFSIEGQL EERQRIGWKL VYKDHEDDIL LLGDDPWEEF VGCVKCIRIL SPQEVQQMSL  1080
EGCDLGNNIP PNQACSSSDG GNAWRARCDQ NSGNPSNGSY EQFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-149	40	349	46	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB071296	0.0	AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643493.1	0.0	auxin response factor 19
Swissprot	Q0D9R7	0.0	ARFS_ORYSJ; Auxin response factor 19
TrEMBL	A0A0E0E608	0.0	A0A0E0E608_9ORYZ; Auxin response factor
STRING	ORGLA06G0221800.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1409	35	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang S, et al. The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1. Plant Cell Environ., 2015. 38(4): p. 638-54 [PMID:24995795]