PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G27280.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 237aa    MW: 24151.8 Da    PI: 8.4138
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G27280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.51.5e-67121644154
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrel..kskkqsalsstk 90 
                       ++sCqdCGn+akkdC+h RCRtCC+srgf+CathvkstWvpaakrrerqqqlaa+ + aaa++     a+aaskr+rel    ++++a+ +t+
  OMERI06G27280.1  12 AGTSCQDCGNNAKKDCSHLRCRTCCRSRGFSCATHVKSTWVPAAKRRERQQQLAALFRGAAANNsaaaaAAAASKRPRELvrLPSANTAMVATT 105
                      4579***************************************************999998888777777788889998733344444444444 PP

           DUF702  91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      +ss+         ++P+e+s+eavfrcvr+++vd++++elaYqtavsigGh+fkGiL+d+G+++
  OMERI06G27280.1 106 TSSG-----EGDGRFPPELSVEAVFRCVRIGAVDEADAELAYQTAVSIGGHTFKGILRDHGPAD 164
                      4444.....45678***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.0E-6413163IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.0E-241557IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.1E-20114162IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGGPGGAGGG RAGTSCQDCG NNAKKDCSHL RCRTCCRSRG FSCATHVKST WVPAAKRRER  60
QQQLAALFRG AAANNSAAAA AAAASKRPRE LVRLPSANTA MVATTTSSGE GDGRFPPELS  120
VEAVFRCVRI GAVDEADAEL AYQTAVSIGG HTFKGILRDH GPADEAAGQL PPSSAEYHQL  180
TGQGREESSP AGSSEGVGGG HGAATAATSA AVLMDPYPTP IGAFAAGTQF FPHNPRT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043290.0AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054630.0AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642175.11e-135protein SHI RELATED SEQUENCE 1
RefseqXP_025881792.11e-135protein SHI RELATED SEQUENCE 1
SwissprotQ9SD404e-62SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A0E0E6A51e-171A0A0E0E6A5_9ORYZ; Uncharacterized protein
STRINGOMERI06G25600.11e-171(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-56Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]