PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G27970.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 353aa MW: 38297.8 Da PI: 7.6356

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G27970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+++F++ + H+r+H OMERI06G27970.1 58 YPCPLCDRHFPTEKAVHGHMRSH 80 99********************9 PP
2	zf-C2H2	17.3	1.3e-05	224	246	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+++F++ + H+r+H OMERI06G27970.1 224 YPCPLCDRHFPTEKAVHGHMRSH 246 99********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.6E-6	57	128	No hit	No description
PROSITE profile	PS50157	10.055	58	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0013	58	80	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.4E-5	58	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.8E-8	105	129	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.014	106	133	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.4	106	128	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.99E-6	223	294	No hit	No description
SMART	SM00355	0.0013	224	246	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.055	224	251	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.4E-5	224	247	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	226	246	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.8E-8	271	295	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.4	272	294	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.014	272	299	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	274	294	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MAGQPQVFVH HHGHALGGGS GDDDPTHPWL SLKSSHEIDD AVASWREKLA DMAAGGRYPC 60 PLCDRHFPTE KAVHGHMRSH PGRGWRGMEP PPGDLALAAD GKRYRYVCDR CKAPFETRQA 120 LGGHRASHST KKGCSWHAKQ LAMEMASKPP KNDFDLNHLS LEAIQAAQEE QAAAAQEGCS 180 SITTGTPSVA APATTTPPTH GCPSNDAVAS WREKLADMAA GGRYPCPLCD RHFPTEKAVH 240 GHMRSHPGRG WRGMEPPPGD LALAADGKRY RYVCDRCKAP FETRQALGGH RASHSTKKGC 300 SWHAKQLAME MASKPPKNDF DLNHLSLEAI QAAQEEQAAA AQEGYKDEAE PNN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MAGQPQVFVH HHGHALGGGS GDDDPTHPWL SLKSSHEIDD AVASWREKLA DMAAGGRYPC  60
PLCDRHFPTE KAVHGHMRSH PGRGWRGMEP PPGDLALAAD GKRYRYVCDR CKAPFETRQA  120
LGGHRASHST KKGCSWHAKQ LAMEMASKPP KNDFDLNHLS LEAIQAAQEE QAAAAQEGCS  180
SITTGTPSVA APATTTPPTH GCPSNDAVAS WREKLADMAA GGRYPCPLCD RHFPTEKAVH  240
GHMRSHPGRG WRGMEPPPGD LALAADGKRY RYVCDRCKAP FETRQALGGH RASHSTKKGC  300
SWHAKQLAME MASKPPKNDF DLNHLSLEAI QAAQEEQAAA AQEGYKDEAE PNN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108097	1e-178	AK108097.1 Oryza sativa Japonica Group cDNA clone:002-139-A09, full insert sequence.
GenBank	AP004685	1e-178	AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10.
GenBank	AP014962	1e-178	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	1e-178	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642837.1	9e-95	zinc finger protein ZAT2
TrEMBL	A0A0E0E6L2	0.0	A0A0E0E6L2_9ORYZ; Uncharacterized protein
STRING	OMERI06G26360.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13010	27	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	2e-13	C2H2-like zinc finger protein