PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G00950.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 189aa MW: 19713.1 Da PI: 11.2135

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G00950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.1	8.1e-13	70	121	1	52
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 e++++r rrk++NRe+ArrsR+R+++++eeLe+ ++eL ae++aL+++l+ OMERI07G00950.1 70 EERRRRLRRKISNRESARRSRARRRQRVEELERAADELRAERRALASRLDAT 121 68899*******************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.6E-8	69	120	No hit	No description
SMART	SM00338	2.1E-7	70	134	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.5E-9	70	120	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.036	72	135	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.64E-8	74	125	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MPLDFGLPDM DVGFGLFGVD AAAAVFGYDG VASDAAAGLS PVVGAGDGSG GGGDVLLYCE 60 GGGGGEDGEE ERRRRLRRKI SNRESARRSR ARRRQRVEEL ERAADELRAE RRALASRLDA 120 TARRALAVRG ANARLHAEAG VLRRRLGEAQ RNAAVLIGLS RLLRSTANGA HGGAAPAQLP 180 NGGVASLMT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003702	0.0	AP003702.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1007_H09.
GenBank	AP005309	0.0	AP005309.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0474G09.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CU406121	0.0	CU406121.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M06, full insert sequence.
GenBank	CU406481	0.0	CU406481.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103G11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466386.1	1e-16	DNA-binding protein EMBP-1
TrEMBL	A0A0E0E749	1e-123	A0A0E0E749_9ORYZ; Uncharacterized protein
STRING	OMERI07G01010.1	1e-124	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16831	9	9