PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G00980.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 619aa    MW: 65859.9 Da    PI: 7.7744
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G00980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-12267323155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  OMERI07G00980.1 267 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 323
                      78*******************77776664346655.77******************98 PP
2AP247.25.7e-15368417355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  OMERI07G00980.1 368 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 417
                      9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.91E-17267331No hitNo description
PfamPF008471.1E-9267323IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-14267332IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-12268332IPR001471AP2/ERF domain
SMARTSM003808.3E-23268337IPR001471AP2/ERF domain
PROSITE profilePS5103217.359268331IPR001471AP2/ERF domain
PRINTSPR003673.5E-6269280IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18366426IPR016177DNA-binding domain
CDDcd000185.77E-23366427No hitNo description
PROSITE profilePS5103219.296367425IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-18367425IPR001471AP2/ERF domain
SMARTSM003801.9E-33367431IPR001471AP2/ERF domain
PfamPF008473.2E-10368417IPR001471AP2/ERF domain
PRINTSPR003673.5E-6407427IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MTNSNNGNGG TNAAASGWLG FSLSPHMASS MDEHHHVHHH QQQQQQQQQQ QQHHQQQHGL  60
FFPSVTTAAA AAYGLAGDVV AATNGYYSQL ASMPLKSDGS LCIMEALRRT DQDHHGPKLE  120
DFLGAAQPAM ALSLDNTSSF YYGGGAAAAA TGHGHHGYLQ ACDLYGGPAA PWVAARGGAT  180
AYATGAADAN AAENVLPSAT AAQHLHHPLA LSMSSGSLSS CITAGEYGMA AVAAADGGRK  240
RGGAGAGGQK QPVHHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR  300
QGGYDMEEKA ARAYDLAALK YWGPSTHINF PLEDYQEELE EMKNMTRQEY VAHLRRKSSG  360
FSRGASMYRG VTRHHQHGRW QARIGRVSGN KDLYLGTFST QEEAAEAYDV AAIKFRGLNA  420
VTNFDITRYD VDKIMASNTL LPADLARRNA ATTTSKDDHS AAASAAIVSV HHAADIAVAD  480
TLWKATTAPR QQQHHHDDVV LSGADQAAFS VLHDLVAVDA AAAAAQHQQQ QHMSMSAASS  540
LVTSLSNSRE GSPDRGGGLS MLFAKPSPAV AASAQQQAST KLMAAPLPLG SWVSSPPASA  600
RPPAVSIAHM PLFAAWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098480.0AK109848.1 Oryza sativa Japonica Group cDNA clone:002-148-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882597.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0E7520.0A0A0E0E752_9ORYZ; Uncharacterized protein
STRINGOMERI07G01040.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-125AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]