PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G01290.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 455aa MW: 49387.4 Da PI: 5.3454

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G01290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.3	5.6e-18	281	327	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq OMERI07G01290.1 281 VHNLSERRRRDRINEKLRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 327 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.55E-16	273	331	No hit	No description
SuperFamily	SSF47459	3.27E-21	275	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.768	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-15	281	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-21	281	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-17	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MLRTPRHLTL LPRYSHFLST SKRSKKNECD LPAVEELRRH GCGCNCKVVV VGDDDDEPEE 60 ALAVIKISHL EISFCLLAWR SSDGELVELL WQDGGVVAHA QTRHRSPGLL ARSGVTGEEE 120 TASAWFADGG GGDDALGVGM GRDIYSQFWH SFANVDGHAA GALALATPTP TPRAAARKDD 180 VSSRLDEAGL SICGSNAVAA PALPADDDDD DIDAAAPREE EEEGTGAARA GGASSSGGSG 240 SGSYPLFKRG RDELDSLSEV ADETRPSKRP AAKRRTRAAE VHNLSERRRR DRINEKLRAL 300 QELVPHCNKT DKASILDEAI EYLKSLQMQI QIMWMTTGIA PMMFPGAHQL MPPMGMGLNT 360 ACMPGAQAQG LNQMQRTTYY MNNSLPNQMP QIPSPVMSAP NVPNDMQSDN RIRGPRNPFL 420 HCNDTLTATA QVPVTNMQAT RGDEQRKAEQ LVLEE

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MLRTPRHLTL LPRYSHFLST SKRSKKNECD LPAVEELRRH GCGCNCKVVV VGDDDDEPEE  60
ALAVIKISHL EISFCLLAWR SSDGELVELL WQDGGVVAHA QTRHRSPGLL ARSGVTGEEE  120
TASAWFADGG GGDDALGVGM GRDIYSQFWH SFANVDGHAA GALALATPTP TPRAAARKDD  180
VSSRLDEAGL SICGSNAVAA PALPADDDDD DIDAAAPREE EEEGTGAARA GGASSSGGSG  240
SGSYPLFKRG RDELDSLSEV ADETRPSKRP AAKRRTRAAE VHNLSERRRR DRINEKLRAL  300
QELVPHCNKT DKASILDEAI EYLKSLQMQI QIMWMTTGIA PMMFPGAHQL MPPMGMGLNT  360
ACMPGAQAQG LNQMQRTTYY MNNSLPNQMP QIPSPVMSAP NVPNDMQSDN RIRGPRNPFL  420
HCNDTLTATA QVPVTNMQAT RGDEQRKAEQ LVLEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	289	KRRTRAAEVHNLSERRRR
2	285	290	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN400276	0.0	JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648046.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
Swissprot	Q10CH5	8e-83	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A0E0E791	0.0	A0A0E0E791_9ORYZ; Uncharacterized protein
STRING	OMERI07G01350.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-27	phytochrome interacting factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]