PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G01290.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 377aa MW: 40552.2 Da PI: 4.8671

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G01290.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.7	4.3e-18	203	249	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq OMERI07G01290.4 203 VHNLSERRRRDRINEKLRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 249 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.38E-17	195	253	No hit	No description
SuperFamily	SSF47459	2.49E-21	197	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.768	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-21	203	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-15	203	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-17	205	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MYSSDGELVE LLWQDGGVVA HAQTRHRSPG LLARSGVTGE EETASAWFAD GGGGDDALGV 60 GMGRDIYSQF WHSFANVDGH AAGALALATP TPTPRAAARK DDVSSRLDEA GLSICGSNAV 120 AAPALPADDD DDDIDAAAPR EEEEEGTGAA RAGGASSSGG SGSGSYPLFK RGRDELDSLS 180 EVADETRPSK RPAAKRRTRA AEVHNLSERR RRDRINEKLR ALQELVPHCN KTDKASILDE 240 AIEYLKSLQM QIQIMWMTTG IAPMMFPGAH QLMPPMGMGL NTACMPGAQA QGLNQMQRTT 300 YYMNNSLPNQ MPQIPSPVMS APNVPNDMQS DNRIRGPRNP FLHCNDTLTA TAQVPVTNMQ 360 ATRGDEQRKA EQLVLEE

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MYSSDGELVE LLWQDGGVVA HAQTRHRSPG LLARSGVTGE EETASAWFAD GGGGDDALGV  60
GMGRDIYSQF WHSFANVDGH AAGALALATP TPTPRAAARK DDVSSRLDEA GLSICGSNAV  120
AAPALPADDD DDDIDAAAPR EEEEEGTGAA RAGGASSSGG SGSGSYPLFK RGRDELDSLS  180
EVADETRPSK RPAAKRRTRA AEVHNLSERR RRDRINEKLR ALQELVPHCN KTDKASILDE  240
AIEYLKSLQM QIQIMWMTTG IAPMMFPGAH QLMPPMGMGL NTACMPGAQA QGLNQMQRTT  300
YYMNNSLPNQ MPQIPSPVMS APNVPNDMQS DNRIRGPRNP FLHCNDTLTA TAQVPVTNMQ  360
ATRGDEQRKA EQLVLEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	211	KRRTRAAEVHNLSERRRR
2	207	212	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN400276	0.0	JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648046.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
Swissprot	Q10CH5	2e-84	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A0E0E794	0.0	A0A0E0E794_9ORYZ; Uncharacterized protein
STRING	OMERI07G01350.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-28	phytochrome interacting factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]