PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G03390.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 612aa    MW: 65760.4 Da    PI: 6.1585
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G03390.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.73.7e-16296334240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  OMERI07G03390.3 296 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 334
                      589**********************************96 PP
2TCR51.32.3e-16382421140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ 
  OMERI07G03390.3 382 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCEGCKNTF 421
                      589***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-17295336IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.33296422IPR005172CRC domain
PfamPF036386.6E-12298333IPR005172CRC domain
SMARTSM011141.7E-17382423IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.8E-12384420IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MDTPDRAAAA PSAAARAELM DGCQPEKLND EILGCDWDDL ISATSGELIA YDEDHKGVQL  60
AVSNAESCGF LLSKLTGDGD ISDRTHPSSS TQTYYRELLM DEDQTENAQL VPDGEKNIST  120
EEIQDNLYEA NGSIPTGYKV ETQQQRGMRR RCLVFEAAGY SNRIVQKESV MDLSVSTCKG  180
KSPVQNHSNP GKTPSPRVLR GIGLHLNALA LTSKDKMVCQ DPISSLVPSS ATQQEAHGKM  240
LSAGENFIHS GSELLELQMD DDCSAGVFLG NDHDSSQSNS PQKKRRKADN GDDGEACKRC  300
SCKKSKCLKL YCECFAAGVY CSEPCSCQGC LNKPIHEEIV LSTRKQIEFR NPLAFAPKVI  360
RMSDAGQDIT GEDPNNTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSS NCRCEGCKNT  420
FGKRDAAVST EAEEMKQGGE EAENCGKEKE NDLQKANVQS EDQPFLELVP ITPPFDVSSS  480
LLKPPNFSSA KPPRPTKARS NSSRSSSKAP GAVHSQKFTK IANSGLNEEM PDILRDDASP  540
GNCVKTSSPN GKRVSPPHNA LSVSPSQKGG RKLILKSIPS FPSLIGDASS GSSMNSSESA  600
FNTASPLALG PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1629841912120Protein lin-54 homolog
5fd3_B1e-1629841912120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282286KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658970.0AK065897.1 Oryza sativa Japonica Group cDNA clone:J013048O08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646690.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A0E0E8400.0A0A0E0E840_9ORYZ; Uncharacterized protein
STRINGOMERI07G03420.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.18e-86TESMIN/TSO1-like CXC 2