PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G03500.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 359aa    MW: 40418 Da    PI: 4.3993
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G03500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35401312102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+ ++  +sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll+
  OMERI07G03500.1  40 FLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANENFLRGQRHLLK 124
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k 
  OMERI07G03500.1 125 NIKRRKP 131
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3836129IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.12E-3536129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.4E-6136129IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-184063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1891103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDDPMLNAVK EEEGEDGAAA AAGVAPRPME GLHDAGPPPF LTKTYDMVDD AGTDAAVSWS  60
ATSNSFVVWD PHAFATVLLP RFFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANENFLRGQR  120
HLLKNIKRRK PPSHTASNQQ SLGPYLEVGH FGYDAEIDRL KRDKQLLMAE VVKLRQEQQN  180
TKANLKAMED RLQGTEQRQQ QMMAFLARVM KNPEFLKQLM SQNEMRKELQ DAISKKRRRR  240
IDQGPEVDDV GTSSSIEQES PALFDPQDSV EFLVDGIPSD LENSAMDAGG LVEPQDFDVG  300
TSEQQQIGPQ VELNDNFWEE LLNEGLVGEE NDNPVVEDDM NVLSEKMGYL NSNGPTVGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-263512921129Heat shock factor protein 1
5d5v_B1e-263512921129Heat shock factor protein 1
5d5v_D1e-263512921129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128LKNIKRR
2234239KKRRRR
3235240KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444870.0AY344487.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645272.10.0heat stress transcription factor A-2b
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A0E0E8580.0A0A0E0E858_9ORYZ; Uncharacterized protein
STRINGOMERI07G03540.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-105heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]