PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G04410.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 350aa    MW: 38892.5 Da    PI: 9.526
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G04410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.77.6e-56201501128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL++k+++  +++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++
  OMERI07G04410.1  20 LPPGFRFHPTDEELITYYLRQKIADGGFTA-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFT 112
                      79*************************999.89***************99999****************************************9 PP

              NAM  95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + elvg+kktLvfykgrap+gekt+Wvmheyrl
  OMERI07G04410.1 113 GqppaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 150
                      766666677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6417171IPR003441NAC domain
PROSITE profilePS5100560.86320171IPR003441NAC domain
PfamPF023652.3E-2921150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAMGMEGSGG GPAKKKEESL PPGFRFHPTD EELITYYLRQ KIADGGFTAR AIAEVDLNKC  60
EPWDLPEKAK MGEKEWYFFS LRDRKYPTGV RTNRATNAGY WKTTGKDKEI FTGQPPATPE  120
LVGMKKTLVF YKGRAPRGEK TNWVMHEYRL HSKSIPKSNK DEWVVCRIFA KTAGVKKYPS  180
NNAHSRSHHP YTLDMVPPLL PALLQQDPFG RGHHPYMNPA DMAELSRFAR GTPGLHPHIQ  240
PYPGYINPAV PFTLSGLNLN LGSSPAMPPP PPPPPQSILQ AMSMPMNQPS ATNQVMATEQ  300
MIPGLANGVI PQGTDGGFTT DVVVGGTGIR YQNLDVEQLV ERYWPGSYQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-551917716171NO APICAL MERISTEM PROTEIN
1ut4_B2e-551917716171NO APICAL MERISTEM PROTEIN
1ut7_A2e-551917716171NO APICAL MERISTEM PROTEIN
1ut7_B2e-551917716171NO APICAL MERISTEM PROTEIN
4dul_A2e-551917716171NAC domain-containing protein 19
4dul_B2e-551917716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025110.0AK102511.1 Oryza sativa Japonica Group cDNA clone:J033095I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612624.10.0NAC domain-containing protein 92
RefseqXP_015612625.10.0NAC domain-containing protein 92
SwissprotQ9FLJ23e-83NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0E0E8I20.0A0A0E0E8I2_9ORYZ; Uncharacterized protein
STRINGOMERI07G04420.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-93NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]