PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G05880.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 672aa    MW: 73537.5 Da    PI: 5.2284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G05880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-14491537455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h   ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  OMERI07G05880.1 491 NHVLKERRRREKLNEKFIILRSLVPFM-----TKMDKASILGDTIEYVKQLR 537
                      79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-457208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.098487536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-18488552IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-15491541No hitNo description
PfamPF000101.8E-11491536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-18491550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15493542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MAGGEAQAAL QAVAQSLRWT YSLLWQLCPH QGSSLVWAEG HYNGAVKTRK STVMQPPAAV  60
AAAAEEEDDA DHAARHRSRQ LRELYDWLQQ AGENSSGGGG GVQTLSTAAS RRPGAALSPE  120
DLTETEWFFL MSASYSFPPS VGLPGRAFAR RGHVWLTGAN EVDSKVFLRA ILAKTVVCIP  180
VVDGVLEIGT TEKVEEDMGL IQYARGIFMD QHGIHMKPTL SQHSTSNPVT HCTHQHPIQV  240
QMQLGITSQT KFDYSDELNA EEENDDTEEE GMSGSDTNNT DTERNSGQLQ LQMQDQLNMM  300
SNDHQTMPNN AVSSELMQCE MPEVVRDGCS NNILEDDIQM LMDCQNSNCQ FNLQGPDEPC  360
HSWHFLCEEL QNDYQPATEG QVASPENTHY PKTLMTILHY NTQRQQEMNI KNYLPVSEKS  420
SFSRWTTPEG TDDNKTMISQ GTTQRMLKSI LMIVPSSHCS YRGAETPESR GGKGASGTRK  480
VSAIQGDFSA NHVLKERRRR EKLNEKFIIL RSLVPFMTKM DKASILGDTI EYVKQLRNRI  540
QELESSSSRA AARTPSAAAA GRRRKRSAAA ATATAAEGIC SSNAGNGNGN GGEAAEVVQV  600
SIIESDALLE LRCGCGGGGG GVVLLRVMQA MQELQLEVTA VQASCAGGEL LAELRAKVVV  660
MILICMQMQM QN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-16720810192Transcription factor MYC3
4rqw_B4e-16720810192Transcription factor MYC3
4rs9_A4e-16720810192Transcription factor MYC3
4yz6_A4e-16720810192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1495500ERRRRE
2496501RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF3030610.0JF303061.1 Oryza sativa Indica Group SD7-1D bHLH transcription factor (SD7-1/Rc) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646360.20.0LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like
TrEMBLA0A0E0E9270.0A0A0E0E927_9ORYZ; Uncharacterized protein
STRINGOMERI07G05890.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-61bHLH family protein