PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G09670.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 255aa MW: 28702.9 Da PI: 4.8263

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G09670.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.9	5.3e-21	72	123	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le++Fe++ y+ ++r eLAkklg++erqVk+WFqNrR+++k OMERI07G09670.4 72 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQVKFWFQNRRTRKK 123 579***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-21	61	124	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.827	65	125	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.17E-18	67	123	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-17	67	129	IPR001356	Homeobox domain
CDD	cd00086	3.91E-19	69	123	No hit	No description
Pfam	PF00046	2.3E-18	72	123	IPR001356	Homeobox domain
PRINTS	PR00031	2.1E-6	96	105	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.1E-6	105	121	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MVCLGCNTLV KSNQLTMDNG SQQESSDLHV HHLPIASVIG VEDRTEEADD AAVDYHDDGG 60 EGQDEVSNKR MKRHTDDQIK HLESVFERCT YLGGNQRVEL AKKLGMEERQ VKFWFQNRRT 120 RKKMHDERQE SMWLQEENDV LHAENKVLKE AIWANICFTC GSPVVPAIPT VHHRYLSFQN 180 MRLDDELQHA TAVFNMVAQD ADVGLPPVFP LTDVSPLPQF GFVTGNNQTS LVIDPPSPSQ 240 SENQVSTESA NSTST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004298	0.0	AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09.
GenBank	AP005690	0.0	AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0EAJ1	0.0	A0A0E0EAJ1_9ORYZ; Uncharacterized protein
STRING	OMERI07G09630.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	8e-32	homeodomain GLABROUS 1