PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G09680.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 201aa MW: 20886.8 Da PI: 9.0716

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G09680.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32.3	2.9e-10	11	146	4	127
NAM 4 Gfr..FhPtdeelvveyLkkkvegkkleleev..ikev.diykvePwdLpk.....kvkaeekewyfFskrdkkya.tgkrknratk...sgy. 82 Gfr F P+d++l+++ L +k+++ +++ + +++v d++ + P +L + +++ + wyfF ++++ a ++k + ra+ g OMERI07G09680.1 11 GFRipFLPSDSDLLDCLLIPKIASGRVDSRFAplVHDVaDMFALPPGQLAAthapaPGAGGAEAWYFFGAHRRARAgSKKAAARAVGyggGGCk 104 6665599****************96553322599999******843444322236779**99888776245566677554332225 PP NAM 83 .WkatgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyr 127 W + g +k v g + + + +r+ +g+ +Wvm ey OMERI07G09680.1 105 rWCSVGAKKVVEG-----GGFCQRFRYK-ERTASGVlaPPRWVMVEYG 146 5999999665544.....4677788876.5666665235689999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.948	10	167	IPR003441	NAC domain
Pfam	PF02365	6.3E-8	13	146	IPR003441	NAC domain
SuperFamily	SSF101941	6.15E-19	15	167	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MAPLADPAVE GFRIPFLPSD SDLLDCLLIP KIASGRVDSR FAPLVHDVAD MFALPPGQLA 60 ATHAPAPGAG GAEAWYFFGA HRRARAGSKK AAARAVGYGG GGCKRWCSVG AKKVVEGGGF 120 CQRFRYKERT ASGVLAPPRW VMVEYGVAEE PGGEGVAELV LCKIFRSPEP SPHSESGSPS 180 SSSSASASPS CSGGRKRKAA E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012615	1e-165	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658578.1	9e-52	PREDICTED: NAC domain-containing protein 72-like
TrEMBL	A0A0E0EAJ2	1e-140	A0A0E0EAJ2_9ORYZ; Uncharacterized protein
STRING	OMERI07G09640.1	1e-141	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15395	10	17