PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G11790.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 205aa    MW: 21357.2 Da    PI: 9.5855
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G11790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.22.1e-12111414127
              NAM   4 Gfr..FhPtdeelvveyLkkkvegkk..leleevikev.diykvePwdLpk.....kvkaeekewyfFskrdkkyatgkr.knratksgy.Wka 85 
                      Gfr  F P+d++l+++ L++k+++ +   +++  +++v d + + P +L +       +a+ + wyfFs r ++ a +kr + ra+  g  W +
  OMERI07G11790.1  11 GFRipFLPSDSDLLDCLLRPKIASGRvdPRFAPLVHDVaDAFALPPAQLAAthapaPGAAGAEAWYFFSARPRARAGSKRaAARAVGGGKrWCS 104
                      6655599****************9995433334599999**********843455422337789********9999766515678887756*** PP

              NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                       g +k+v        g  + + + + +a   +  +W++ ey 
  OMERI07G11790.1 105 VGAKKAVEG-----GGYCQRFRYKERTAAGVVAPRWMLVEYG 141
                      ***999977.....5778889999888888889999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.35310171IPR003441NAC domain
PfamPF023652.0E-813141IPR003441NAC domain
SuperFamilySSF1019413.53E-2215171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAPLADPAIE GFRIPFLPSD SDLLDCLLRP KIASGRVDPR FAPLVHDVAD AFALPPAQLA  60
ATHAPAPGAA GAEAWYFFSA RPRARAGSKR AAARAVGGGK RWCSVGAKKA VEGGGYCQRF  120
RYKERTAAGV VAPRWMLVEY GVAQEHGGEG VAQEHGGEGV AELVLCKIFR SPEPSPRSES  180
GSPSSSSSAS ASPSCSGGRK RKAAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658578.11e-52PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A0E0EBH41e-142A0A0E0EBH4_9ORYZ; Uncharacterized protein
STRINGOMERI07G11860.11e-143(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153951017