PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G12560.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 289aa MW: 28042.3 Da PI: 7.5838

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G12560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	66.1	6.1e-21	2	35	29	62
zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 Pr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ OMERI07G12560.1 2 PRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 35 9******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	18.138	1	33	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-15	2	33	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-14	2	33	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRSRSGGAA PGGGVGRGGP GGGAAAAAAV 60 SSAGGAAGTS PALPQPGSLP SLSSALGLTG GTSLASLLLG SGGSGGDHLG LFQAMQSVVS 120 DAAAFEMHQQ HQSQVDHLLG LGYGAAGAQI QAAKPWLHDG GATGGLLDGF YAPLLSGSIV 180 PGLEELQVKA EATTGDHQQK SSAAAAAAAG EQSWDLPTPS SSNVEASIIA SDALMAAAAA 240 SMNPAVSAAA ASMAPSAQSL LYWGNGGIGA AAAAWPDLAN CGSSIATLF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003815	0.0	AP003815.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1163_G04.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647864.1	1e-112	dof zinc finger protein DOF5.4
TrEMBL	A0A0E0EBT6	0.0	A0A0E0EBT6_9ORYZ; Uncharacterized protein
STRING	ORGLA07G0128800.1	1e-112	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	5e-16	TARGET OF MONOPTEROS 6