PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G13080.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 240aa    MW: 26795.6 Da    PI: 7.0479
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G13080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-055375123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  OMERI07G13080.1 53 YTCSFCQREFRSAQALGGHMNVH 75
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.54E-65079No hitNo description
PROSITE profilePS5015711.2615380IPR007087Zinc finger, C2H2
SMARTSM003550.00315375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEEQRGEEEW VMWGSAGRRR IIRQSASWEE QAFARDAAAN ANLGGCVWPP RFYTCSFCQR  60
EFRSAQALGG HMNVHRRDRA RLRHRQTSSP SHQEEEAEAH QDQQAGPYCC SYTSFSKPST  120
TSTDNTTSND ILLLAREETI KKKVPRQQVQ VADQDEDDEP AGRRYKRRRL GLVDQLPSSC  180
EGGDHHHQVL IITPTTAAAS PSSIITSASA LVVGDQQHQQ AGSVLDLELR LGTSKAVMHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124875229superman protein
2l1o_A1e-124875229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11623GRRRIIRQ
2165169KRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330080.0AC133008.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615827.11e-125probable transcriptional regulator RABBIT EARS
TrEMBLA0A0E0EC161e-179A0A0E0EC16_9ORYZ; Uncharacterized protein
STRINGOMERI07G13200.11e-179(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174901111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-15C2H2 family protein