PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G15550.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 947aa    MW: 105093 Da    PI: 8.3123
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G15550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.18e-19445544198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  OMERI07G15550.1 445 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 536
                      89**************************777788889***************9989999999***9.********************987.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  OMERI07G15550.1 537 KLVMGFRK 544
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.40.330.102.2E-29441546IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-19442544IPR015300DNA-binding pseudobarrel domain
CDDcd100175.81E-22443544No hitNo description
PROSITE profilePS5086311.251445546IPR003340B3 DNA binding domain
SMARTSM010195.7E-21445545IPR003340B3 DNA binding domain
PfamPF023628.2E-16445544IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17700750IPR011124Zinc finger, CW-type
PfamPF074964.9E-11705747IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP PPHPHPQQPP QAHQQQQQQQ  60
GPPGHAPPQQ RPRICFNAHC KDPKSDGPRR RGWRLRNGDF AELCDRCYHS FEHGGFCETF  120
HLEVAGWRNC ESCGKRLHCG CIVSVHAFVH LDAGGVECVM CARKSHAAMA PSQIWSSSMH  180
MAQNVADRKD NFVKSWRPPA GQFSSQWRQN NMWSMSTMQS DLQQRLAFEF DRPSGSEKLL  240
PGRTFIHAHE KKFDDMHDRP TTPAGMNQIM RERYANGHTQ HTTLDPTYAY TLYHREGTNP  300
NLHDHSHHAG ENDHLTARKG VTSDPCSSVS TTFKLDSHHP SILKDDPSAL PAGLSPNFSS  360
ANGPKDHIRI GPTQQQQQMA SSSLQKQFYS HSVIDNDFQA QLRNGRPRMD AKARSQLLPR  420
YWPRITDQEL QHLSGDSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPAISQAEGL  480
PLKVQDATGK EWVFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RIDPEGKLVM  540
GFRKATNLSA EQDQPTKPAN GVPPPPEANN KVVVPDSSPN AAVPRPIKVN TESKSSSPVE  600
QATACKIDKG ALPQKEGPGT SSSSPLTVKR KATSVGPKIK RFRMDSEESM ELKITWEEAQ  660
ELLRPPPKAP SIVVVDGHEF EEYEEPPILG RRTYFVTDQS GENHQWAQCE DCSKWRKLPV  720
DALLPSKWTC SDNKWDSERS SCDSAQEINM EELGEMIPIK PGAAKKTKGK VDTDNIDVSD  780
GLDTLANLAI LGEGESLPSQ PTTRHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCMTV  840
RRRFRTLMMR REKRQQSEKD SGVPRKREPG QSSEPVPQSG SGAHPTSTSS PPQRADTNGE  900
GPEDMSIDNK RTSSPVKNQI DLNSQPERED EQSPKSDATR LLRDNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-644235471125B3 domain-containing transcription repressor VAL1
5yzz_C4e-644235471125B3 domain-containing transcription repressor VAL1
5z00_C4e-644235471125B3 domain-containing transcription repressor VAL1
5z00_G4e-644235471125B3 domain-containing transcription repressor VAL1
5z00_K4e-644235471125B3 domain-containing transcription repressor VAL1
5z00_M4e-644235471125B3 domain-containing transcription repressor VAL1
6j9a_A4e-644235472126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0E0ED440.0A0A0E0ED44_9ORYZ; Uncharacterized protein
STRINGOMERI07G15800.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-143HSI2-like 1