PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G15550.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 943aa MW: 104576 Da PI: 8.2508

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G15550.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.1	8e-19	459	558	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e+ OMERI07G15550.4 459 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 550 89************************777788889***********99899999999.*******************987.777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +lv+++++ OMERI07G15550.4 551 KLVMGFRK 558 77777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	144	164	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:2.40.330.10	2.2E-29	455	560	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.49E-19	456	558	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.76E-22	457	558	No hit	No description
PROSITE profile	PS50863	11.251	459	560	IPR003340	B3 DNA binding domain
SMART	SM01019	5.7E-21	459	559	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.2E-16	459	558	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.17	714	764	IPR011124	Zinc finger, CW-type
Pfam	PF07496	4.9E-11	719	761	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP PPHPHPQQPP QAVVSVGVGP 60 PPPTPQHQQQ QQQQGPPGHA PPQQRPRICF NAHCKDPKSD GPRRRGWRLR NGDFAELCDR 120 CYHSFEHGGF CETFHLEVAG WRNCESCGKR LHCGCIVSVH AFVHLDAGGV ECVMCARKSH 180 AAMAPSQIWS SSMHMAQNVA DRKDNFVKSW RPPAGQFSSQ WRQNNMWSMS TMQSDLQQRL 240 AFEFDRPSGS EKLLPGRTFI HAHEKKFDDM HDRPTTPAGM NQIMRERYAN GHTQHTTLDP 300 TYAYTLYHRE GTNPNLHDHS HHAGENDHLT ARKGVTSDPC SSVSTTFKLD SHHPSILKDD 360 PSALPAGLSP NFSSANGPKD HIRIGPTQQQ QQMASSSLQK QFYSHSVIDN DFQAQLRNGR 420 PRMDAKARSQ LLPRYWPRIT DQELQHLSGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC 480 AEAYFPAISQ AEGLPLKVQD ATGKEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT 540 VTFSRIDPEG KLVMGFRKAT NLSAEQDQPT KPANGVPPPP EANNKVVVPD SSPNAAVPRP 600 IKVNTESKSS SPVEQATACK IDKGALPQKE GPGTSSSSPL TVKRKATSVG PKIKRFRMDS 660 EESMELKITW EEAQELLRPP PKAPSIVVVD GHEFEEYEEP PILGRRTYFV TDQSGENHQW 720 AQCEDCSKWR KLPVDALLPS KWTCSDNKWD SERSSCDSAQ EINMEELGEM IPIKPDGLDT 780 LANLAILGEG ESLPSQPTTR HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC NVCMTVRRRF 840 RTLMMRREKR QQSEKDSGVP RKREPGQSSE PVPQSGSGAH PTSTSSPPQR ADTNGEGPED 900 MSIDNKRTSS PVKNQIDLNS QPEREDEQSP KSDATRLLRD NPT

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP PPHPHPQQPP QAVVSVGVGP  60
PPPTPQHQQQ QQQQGPPGHA PPQQRPRICF NAHCKDPKSD GPRRRGWRLR NGDFAELCDR  120
CYHSFEHGGF CETFHLEVAG WRNCESCGKR LHCGCIVSVH AFVHLDAGGV ECVMCARKSH  180
AAMAPSQIWS SSMHMAQNVA DRKDNFVKSW RPPAGQFSSQ WRQNNMWSMS TMQSDLQQRL  240
AFEFDRPSGS EKLLPGRTFI HAHEKKFDDM HDRPTTPAGM NQIMRERYAN GHTQHTTLDP  300
TYAYTLYHRE GTNPNLHDHS HHAGENDHLT ARKGVTSDPC SSVSTTFKLD SHHPSILKDD  360
PSALPAGLSP NFSSANGPKD HIRIGPTQQQ QQMASSSLQK QFYSHSVIDN DFQAQLRNGR  420
PRMDAKARSQ LLPRYWPRIT DQELQHLSGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC  480
AEAYFPAISQ AEGLPLKVQD ATGKEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT  540
VTFSRIDPEG KLVMGFRKAT NLSAEQDQPT KPANGVPPPP EANNKVVVPD SSPNAAVPRP  600
IKVNTESKSS SPVEQATACK IDKGALPQKE GPGTSSSSPL TVKRKATSVG PKIKRFRMDS  660
EESMELKITW EEAQELLRPP PKAPSIVVVD GHEFEEYEEP PILGRRTYFV TDQSGENHQW  720
AQCEDCSKWR KLPVDALLPS KWTCSDNKWD SERSSCDSAQ EINMEELGEM IPIKPDGLDT  780
LANLAILGEG ESLPSQPTTR HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC NVCMTVRRRF  840
RTLMMRREKR QQSEKDSGVP RKREPGQSSE PVPQSGSGAH PTSTSSPPQR ADTNGEGPED  900
MSIDNKRTSS PVKNQIDLNS QPEREDEQSP KSDATRLLRD NPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	5e-64	437	561	2	126	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241199	0.0	AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647113.1	0.0	B3 domain-containing protein Os07g0563300 isoform X2
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A0E0ED47	0.0	A0A0E0ED47_9ORYZ; Uncharacterized protein
STRING	OMERI07G15800.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-141	HSI2-like 1