PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G15550.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 855aa    MW: 94963.4 Da    PI: 8.2907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G15550.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.37e-19459558198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  OMERI07G15550.5 459 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 550
                      89**************************777788889***************9989999999***9.********************987.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  OMERI07G15550.5 551 KLVMGFRK 558
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.40.330.101.9E-29455560IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-19456558IPR015300DNA-binding pseudobarrel domain
CDDcd100174.82E-22457558No hitNo description
PROSITE profilePS5086311.251459560IPR003340B3 DNA binding domain
SMARTSM010195.7E-21459559IPR003340B3 DNA binding domain
PfamPF023627.1E-16459558IPR003340B3 DNA binding domain
PROSITE profilePS5105011.532714777IPR011124Zinc finger, CW-type
PfamPF074963.4E-8719752IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP PPHPHPQQPP QAVVSVGVGP  60
PPPTPQHQQQ QQQQGPPGHA PPQQRPRICF NAHCKDPKSD GPRRRGWRLR NGDFAELCDR  120
CYHSFEHGGF CETFHLEVAG WRNCESCGKR LHCGCIVSVH AFVHLDAGGV ECVMCARKSH  180
AAMAPSQIWS SSMHMAQNVA DRKDNFVKSW RPPAGQFSSQ WRQNNMWSMS TMQSDLQQRL  240
AFEFDRPSGS EKLLPGRTFI HAHEKKFDDM HDRPTTPAGM NQIMRERYAN GHTQHTTLDP  300
TYAYTLYHRE GTNPNLHDHS HHAGENDHLT ARKGVTSDPC SSVSTTFKLD SHHPSILKDD  360
PSALPAGLSP NFSSANGPKD HIRIGPTQQQ QQMASSSLQK QFYSHSVIDN DFQAQLRNGR  420
PRMDAKARSQ LLPRYWPRIT DQELQHLSGD SNSVITPLFE KMLSASDAGR IGRLVLPKKC  480
AEAYFPAISQ AEGLPLKVQD ATGKEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT  540
VTFSRIDPEG KLVMGFRKAT NLSAEQDQPT KPANGVPPPP EANNKVVVPD SSPNAAVPRP  600
IKVNTESKSS SPVEQATACK IDKGALPQKE GPGTSSSSPL TVKRKATSVG PKIKRFRMDS  660
EESMELKITW EEAQELLRPP PKAPSIVVVD GHEFEEYEEP PILGRRTYFV TDQSGENHQW  720
AQCEDCSKWR KLPVDALLPS KWTCSDNKWD SERTLMMRRE KRQQSEKDSG VPRKREPGQS  780
SEPVPQSGSG AHPTSTSSPP QRADTNGEGP EDMSIDNKRT SSPVKNQIDL NSQPEREDEQ  840
SPKSDATRLL RDNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-644375612126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0E0ED480.0A0A0E0ED48_9ORYZ; Uncharacterized protein
STRINGOMERI07G15800.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-119HSI2-like 1