PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G16070.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 164aa MW: 17831.2 Da PI: 7.7245

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G16070.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	52.7	1.8e-16	13	55	7	48
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtslls.v 48 e++ yvqC+fC t+l+vsvP +s+++vv+v+CGhC+ +ls v OMERI07G16070.1 13 RERLGYVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILSaV 55 6899************************************933 PP
2	YABBY	99.9	5.4e-31	90	158	102	169
YABBY 102 senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 e+ +++vp + +++PP +rqr Psayn+f+keei+rik P+i+h++afs+aaknWah+P+i + OMERI07G16070.1 90 AEDAEDDVPAAAAaANKPPGRRQRTPSAYNCFVKEEIKRIKGLEPNITHKQAFSTAAKNWAHLPRIQQK 158 456666777665559**************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.7E-43	13	157	IPR006780	YABBY protein
SuperFamily	SSF47095	2.49E-7	104	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.1E-5	106	157	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MSSAARHHCS GFRERLGYVQ CSFCATVLLV SVPCSSVLRV VAVQCGHCSG ILSAVNLPPP 60 PSVELPPQDL DIGPPPREYS DESIGDEREA EDAEDDVPAA AAAANKPPGR RQRTPSAYNC 120 FVKEEIKRIK GLEPNITHKQ AFSTAAKNWA HLPRIQQKRG RDSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274019	0.0	AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647119.1	3e-88	protein YABBY 7 isoform X2
Swissprot	A2PZN8	2e-89	YAB7_ORYSJ; Protein YABBY 7
TrEMBL	A0A0E0EDD4	1e-117	A0A0E0EDD4_9ORYZ; Uncharacterized protein
STRING	OMERI07G16360.2	1e-118	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-26	YABBY family protein