PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G16350.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 357aa    MW: 38110.6 Da    PI: 9.3267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G16350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-1791141155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s++ GVr+++ +grWvAeI+d +   ++ r +lg+f ta+ Aa+a+++a++ l+g
  OMERI07G16350.1  91 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETADAAARAYDEAARLLRG 141
                      79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1891150IPR016177DNA-binding domain
PfamPF008471.4E-1191141IPR001471AP2/ERF domain
CDDcd000181.77E-1791149No hitNo description
Gene3DG3DSA:3.30.730.102.1E-2792149IPR001471AP2/ERF domain
SMARTSM003802.1E-3392155IPR001471AP2/ERF domain
PROSITE profilePS5103219.84992149IPR001471AP2/ERF domain
PRINTSPR003671.1E-693104IPR001471AP2/ERF domain
PRINTSPR003671.1E-6115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MPTIKPSSRE QAVGTQTPVS PTLTLSNQNI KKTKKKHKLT HKHMELNFQV QPPVFQLQDY  60
CYYYSQEVAA ASPAAKPTKP RGRKKGSTSH SKFVGVRQRP SGRWVAEIKD TTQKIRMWLG  120
TFETADAAAR AYDEAARLLR GAEARTNFAP RISPDCPLAV RIRGLLHHKK LKKARSAAAA  180
TAGSSGAASK KRSTTAAAAA TPTITTTSNS NSDGSGSACG GSSSSSSSTD SCDGAVKQGG  240
GGGGGATMDA SEVYRPDFVH AGAEEFDSWM FDTAFGPFPE LDSFAAVDAV TPPPATASPE  300
DSSAGTPPVE MAEFERIKVE RRISASLYAM NGLQEYFDKV FDASACDPFW DFSPLCH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-13891481171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037580.0AP003758.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1562_B11.
GenBankAP0038450.0AP003845.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1699_E05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646240.11e-163ethylene-responsive transcription factor ERN1
TrEMBLA0A0E0EDH40.0A0A0E0EDH4_9ORYZ; Uncharacterized protein
STRINGOMERI07G16640.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11