PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G16710.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 685aa    MW: 72393.5 Da    PI: 6.6668
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G16710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05117139123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk F r  nL+ H r H
  OMERI07G16710.1 117 FVCEVCGKGFQRDQNLQLHRRGH 139
                      89*******************88 PP
2zf-C2H215.55e-05195217123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk++  + +Lk H +t+
  OMERI07G16710.1 195 WTCQRCGKRYAVQADLKAHTKTC 217
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.1780.102.8E-71159IPR004176Clp, N-terminal
SuperFamilySSF819234.32E-51259IPR004176Clp, N-terminal
SuperFamilySSF576672.6E-8116139No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5117139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.014117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635117139IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SMARTSM0035588160190IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4183216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.6E-8190215No hitNo description
PROSITE profilePS501578.787195223IPR007087Zinc finger, C2H2
SMARTSM0035590195215IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019538Biological Processprotein metabolic process
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MRADLSTIQQ TLTPEAAAAL ARAMDEAGRR RHGQTTPLHV AAALLAAPAG LLRQACARAA  60
SAAGGGGGVG GAAAAGAGAG AGAAPVVKKK RNLPGTPDPD AEVIALSPGT LLATNRFVCE  120
VCGKGFQRDQ NLQLHRRGHN LPWRLRQRGP GAAPPRRRVY VCPEPGCVHH NPTRALGDLT  180
GIKKHFCRKH GEKRWTCQRC GKRYAVQADL KAHTKTCGTR EYRCDCGTLF TRRDSFVTHR  240
AFCGALVEET GRVLAVPAPP SPRPPDLEAE ENVDKDKEEE VKEKEKEKEL EENEDSPVAE  300
VDEPQPSQAV AEVPQQCAPS PPTPILQEHP QPVVAVVPNV DEQEVVAKPA VIAKIEVEDE  360
RDEDVCFQEA DRYKDAELED SNLLDNDTPM LPCFLPSPSE AIGTDGSSTS CGTGSSVTNA  420
IAPATTTSTF AGLFASVTTS STPQSRSLRD LIGVDPTFLC LAIGAPSSLF PQTNASDPCS  480
FAPPPAPHMS ATALLQKAAE VGASQSSSSF LKEFGLAAST SSSPPSKLSQ GRFTTGNTPT  540
TSHPHPHPHP HPPQGRFMDN VPQPPPPAKL PHRMFTDNSV QQWHHRSNQQ REMEPGPMLP  600
GGLGLGLTYD SGNSGLPDLM MGPSALYGPK PATLDFLGLG IGGTMGGSTA NGGLPALMVG  660
GELDMGSAQA PWEEAKRKTN GRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-29191253365Zinc finger protein JACKDAW
5b3h_F3e-29191253365Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041850.0AP004185.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1301_C12.
GenBankAP0042760.0AP004276.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453G03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647948.10.0protein indeterminate-domain 1
TrEMBLA0A0E0EDM50.0A0A0E0EDM5_9ORYZ; Uncharacterized protein
STRINGOMERI07G17050.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-94C2H2 family protein