PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G16820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 614aa    MW: 65773.1 Da    PI: 6.3317
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G16820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.2e-32233290260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkk +ers  d++++e++Y+g+Hnh+k
  OMERI07G16820.1 233 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCDVKKLLERSL-DGQITEVVYKGRHNHPK 290
                      8****************************************.***************85 PP
2WRKY106.41.5e-33405463159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++dpk v++tYeg+Hnhe
  OMERI07G16820.1 405 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNTGCPVRKHVERASHDPKSVITTYEGKHNHE 463
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27226291IPR003657WRKY domain
PROSITE profilePS5081123.789227291IPR003657WRKY domain
SuperFamilySSF1182908.89E-25231291IPR003657WRKY domain
SMARTSM007748.3E-35232290IPR003657WRKY domain
PfamPF031063.5E-24233289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37390465IPR003657WRKY domain
SuperFamilySSF1182901.44E-29397465IPR003657WRKY domain
PROSITE profilePS5081138.526400465IPR003657WRKY domain
SMARTSM007741.7E-39405464IPR003657WRKY domain
PfamPF031062.4E-26406463IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MADSPNPSSG DHPAGVGGSP EKQPPVDRRV AALAAGAGAR YKAMSPARLP ISREPCLTIP  60
AGFSPSALLE SPVLLTNFKV EPSPTTGTLS MAAIMNKSAN PDILPSPRDK SSGSTHEDGG  120
SRDFEFKPHL NSSSQSTAPA INDPKKHETS MKNESLNTAP SSDDMMIDNI PLCSRESTLA  180
VNVSSAPSQP VGMVGLTDSA PAEVGASELH QMNSSGNAMQ ESQPESVAEK SAEDGYNWRK  240
YGQKHVKGSE NPRSYYKCTH PNCDVKKLLE RSLDGQITEV VYKGRHNHPK PQPNRRLSAG  300
AVPPSQGEER YDVATTDDKS SNVLSNLGNA VHTAGMIEPV PGTASDDDND AGGGRPYPGD  360
DAVEDDDLES KRRKMESAAI DAALMGKPNR EPRVVVQTVS EVDILDDGYR WRKYGQKVVK  420
GNPNPRSYYK CTNTGCPVRK HVERASHDPK SVITTYEGKH NHEVPASRNA SHEMSTPPMK  480
PVVHPINSNM QGLGGMMRAC EPRTFPNQYS QAAESDTISL DLGVGISPNH SDATNQLQSS  540
VSDQMQYQMQ PMGSVYSNMG LPAMAMPTMA GNAASSIYGS REEKPSEGFT FKATPMDHSA  600
NLCYSTAGNL VMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37233466878Probable WRKY transcription factor 4
2lex_A8e-37233466878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705370.0AK070537.1 Oryza sativa Japonica Group cDNA clone:J023062H03, full insert sequence.
GenBankAY3418500.0AY341850.1 Oryza sativa (japonica cultivar-group) WRKY9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646742.10.0WRKY transcription factor SUSIBA2 isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A0E0EDN90.0A0A0E0EDN9_9ORYZ; Uncharacterized protein
STRINGOMERI07G17160.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-131WRKY family protein