PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G16830.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 545aa    MW: 60199.2 Da    PI: 6.4282
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G16830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.84e-1341755441373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elL++cA+av++++  +++ ++ +l++++s +g+p++Rl ay++e+L arla+s++++ykal+++e +   ss+ l+++++++e++P++kf+
  OMERI07G16830.1 175 LKELLIACARAVEEKNSFAIDMMIPELRKMVSVSGEPLERLGAYMVEGLVARLASSGNSIYKALKCKEPK---SSDLLSYMHFLYEACPYFKFG 265
                      5799*****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI eav+ge+r+HiiDf isqG+QW++LlqaLa+Rp+gpp++RiTg++++ s   +   le +g+rL+++A  ++vpfef++l a + 
  OMERI07G16830.1 266 YMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVSAyaRGGGLELVGRRLSHIAGLCKVPFEFHPL-AISG 358
                      *******************************************************888899999************************6.7789 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++e  +L v pgEalaVn+ l+lh+++desvs++++rd++L++vkslsPkv+++ve e+++n+++F +rf+e+l+yy+a+f+s++ +lpr+++
  OMERI07G16830.1 359 SKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLTLPRDDR 452
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      eri++E+++l+reivn++aceg+er er e ++kW++rl++aGF+p pls+ +++++++ll+ ++ d y++ e++g+l+lgWk+rpLv+ SaW
  OMERI07G16830.1 453 ERINMEQHCLAREIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPLSSLVNATIRTLLQSYS-DNYKLAERDGALYLGWKSRPLVVSSAW 544
                      *****************************************************************.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.316149526IPR005202Transcription factor GRAS
PfamPF035141.4E-131175544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MADTPTSRMI HPFSNIPSQN LKQFQYSDNP QHPCHPYRAP SDTHVVPQHH YGLKSHSPDA  60
GYEGQATPNK YTLDSSEGAG CMRHDSPSSQ SFTTRSGSPL SQEDSHSDST DGSPVGASCV  120
TEDPNDLKQK LKDLEAVMLG PDSEIVNSLE NSVANQLSLE PEKWVRMMGI TRGNLKELLI  180
ACARAVEEKN SFAIDMMIPE LRKMVSVSGE PLERLGAYMV EGLVARLASS GNSIYKALKC  240
KEPKSSDLLS YMHFLYEACP YFKFGYMSAN GAIAEAVKGE DRIHIIDFHI SQGAQWISLL  300
QALAARPGGP PTVRITGIDD SVSAYARGGG LELVGRRLSH IAGLCKVPFE FHPLAISGSK  360
VEAAHLGVIP GEALAVNFTL ELHHIPDESV STANHRDRLL RMVKSLSPKV LTLVEMESNT  420
NTAPFPQRFA ETLDYYTAIF ESIDLTLPRD DRERINMEQH CLAREIVNLI ACEGEERAER  480
YEPFGKWKAR LTMAGFRPSP LSSLVNATIR TLLQSYSDNY KLAERDGALY LGWKSRPLVV  540
SSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-661795458375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734700.0AK073470.1 Oryza sativa Japonica Group cDNA clone:J033044I02, full insert sequence.
GenBankAK0988900.0AK098890.1 Oryza sativa Japonica Group cDNA clone:J013001M01, full insert sequence.
GenBankAP0037470.0AP003747.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1127_E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646745.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0E0EDP00.0A0A0E0EDP0_9ORYZ; Uncharacterized protein
STRINGOMERI07G17170.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]