PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G17100.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 596aa    MW: 64243.9 Da    PI: 5.6194
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G17100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.21.4e-961875952374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                       +lLlecA+ v+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+  f+
  OMERI07G17100.1 187 SQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSSFG 279
                      589************************************************************99888744.44444444446*********** PP

             GRAS  95 hltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgv 174
                      h++aN aIle++ +         +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gv
  OMERI07G17100.1 280 HVAANGAILESFLEVaaaassetQRFHILDLSNTFCTQWPTLLEALATRSaDETPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGV 373
                      **********8754434455567999************************8889**********988889999999****************** PP

             GRAS 175 pfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse............ 251
                      pf+f++++++ +l++l+l++L++++     alaVn+v +l  ++  ++  + +rd++   +++l P+vv+vve+ead+   +            
  OMERI07G17100.1 374 PFRFRAVHHSgDLAELDLDALDLREggaTTALAVNCVNSLRGVV--PGRAR-RRDSFAASLRRLDPRVVTVVEEEADLvA-Sdpdassateegc 463
                      *******8888**************888889************9..55555.59***********************954.44899******** PP

             GRAS 252 ....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                           Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et+++W +r+++aGF+pv++se++a+++++ll
  OMERI07G17100.1 464 dteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLL 556
                      *****************************************.**************************************************** PP

             GRAS 342 rkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                      r++  +g+++ e         + ++l Wk++pLv++SaWr
  OMERI07G17100.1 557 RRYR-EGWSMREAgtddssaGAGVFLAWKEQPLVWASAWR 595
                      ****.88888855555666355566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.633160569IPR005202Transcription factor GRAS
PfamPF035144.8E-94187595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDTLFRLVSL QAASEQQQQQ QSASYNSRST TSSGSRSSSH QTNASYSYYH HSSNSGGGGG  60
YYYGGQPPPS QYYYLEPYQE ECGNAPHHQL YMDEDFSSSS SSRHFHHGAP VQQQQPPASS  120
TPTGTAPTPP LSTSSTAAGA GHGLFEAADL SFPPDLNLDF SSPASSSGGG TASSGAVGGG  180
GGGRWASQLL LECARSVAAR DSQRVQQLMW MLNELASPYG DVEQKLASYF LQGLFARLTA  240
SGPRTLRTLA AASDRNTSFD STRRTALRFQ ELSPWSSFGH VAANGAILES FLEVAAAASS  300
ETQRFHILDL SNTFCTQWPT LLEALATRSA DETPHLSITT VVSAAPSAPT AAVQRVMREI  360
GQRMEKFARL MGVPFRFRAV HHSGDLAELD LDALDLREGG ATTALAVNCV NSLRGVVPGR  420
ARRRDSFAAS LRRLDPRVVT VVEEEADLVA SDPDASSATE EGCDTEAAFL KVFGEGLRFF  480
SAYMDSLEES FPKTSNERLA LERGAGRAIV DLVSCPASES MERRETAASW ARRMRSAGFS  540
PVAFSEDVAD DVRSLLRRYR EGWSMREAGT DDSSAGAGVF LAWKEQPLVW ASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-15818159682474Protein SHORT-ROOT
5b3h_B1e-15918159628420Protein SHORT-ROOT
5b3h_E1e-15918159628420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039850.0AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0054370.0AP005437.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1113_E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645491.10.0protein SHORT-ROOT 1
SwissprotA2YN560.0SHR1_ORYSI; Protein SHORT-ROOT 1
TrEMBLA0A0E0EDS30.0A0A0E0EDS3_9ORYZ; Uncharacterized protein
STRINGOMERI07G17430.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-143GRAS family protein