PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G17240.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 231aa    MW: 22987.8 Da    PI: 8.5916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G17240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015143165123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C ++F++   L  H r+H
  OMERI07G17240.1 143 HRCSICLRTFPSGQALGGHKRLH 165
                      79*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.0E-1293117IPR007087Zinc finger, C2H2
SuperFamilySSF576675.87E-793165No hitNo description
SMARTSM003550.6393115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.30793120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
PfamPF139121.3E-12142167IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162143165IPR007087Zinc finger, C2H2
SMARTSM003550.27143165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MALDGKPPVP PPSTPPMDSW ACGGRRSKRR GGGGGSSGSS GSSGGGGGGG ESEEEYLAAC  60
LLMLARGVRD EGEVVGVAAE AAAATAKPSQ HGYGCSVCGK VYGSYQALGG HKTSHRKPPS  120
RAAEPAAGEE PSSGGVAGEA KVHRCSICLR TFPSGQALGG HKRLHYEGAA VGDAVKEKNS  180
LKTKAAAAAA AVATAVLKDF DLNLPAAATT AGDEAESSPP EAKRARLLLL V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647209.12e-99zinc finger protein 1
TrEMBLA0A0E0EDU01e-160A0A0E0EDU0_9ORYZ; Uncharacterized protein
STRINGOMERI07G17570.11e-161(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.14e-23C2H2 family protein