PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G17280.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 473aa    MW: 50502.3 Da    PI: 5.2589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G17280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.71.4e-91774702373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl..fsevsP 89 
                      ++lL++cA+a++++d++l+q++L+ l+++a  dgd++qRl+a f+ AL +r +r  ++ +ka+++  ++  +    ++++++a++l  f +++P
  OMERI07G17280.1  77 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTAAFLCALVSRASR--TGACKAVTAAVADAVEsaalHVHRFTAVELasFIDLTP 168
                      79***************************************************9..44454443333322221234666666666689****** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefn 179
                      +++f++ +aN aI+eaveg   vHi+D++ ++++Q p+L++ La R+egpp lR+T+ + + s         +ee+g +L +fA++ +++++f+
  OMERI07G17280.1 169 WHRFGYTAANAAIVEAVEGFPVVHIVDLGTTHCMQIPTLIDMLAGRAEGPPILRLTVADVAPSApppaLDMPYEELGAKLVNFARSRNMSMDFR 262
                      *********************************************************9886666787777789********************* PP

             GRAS 180 vl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.........erdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                      v+       +++ +++l++++L  + gEal+Vn+++ lh+++de++ + s          r+ +Lk ++ l P +vvvv+++ad ++++ + r+
  OMERI07G17280.1 263 VVptspadaLTSLVDQLRVQQLVSDGGEALVVNCHMLLHTVPDETAGSVSlttaqppvsLRTMLLKSLRALDPALVVVVDEDADFTAGDVVGRL 356
                      **887666555566677777777777****************887665555445566657899******************************* PP

             GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                        a+++ +  +d++++ lp+ se+r+++E+e +g++++nv+a+eg er+er+e  ++W +r+++aGF+++p++e+aa ++k++l+ ++  g+ +
  OMERI07G17280.1 357 RAAFNFLWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVERVERQEDRARWGQRMRAAGFRAAPFGEEAAGEVKAMLNDHA-AGWGM 448
                      *******************************.********************************************************.88999 PP

             GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                      + e++ lvl+Wk++++v++SaW
  OMERI07G17280.1 449 KREDDDLVLTWKGHNVVFASAW 470
                      9********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.83850452IPR005202Transcription factor GRAS
PfamPF035145.0E-8977470IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MQFTHTAPPP PPLHPNGHGL GLGLYLDVGA TRGGGGARPW SSSSSTTTLG GSGYFPSSAA  60
ATSKISLGNL NSTGCMEQLL VHCANAIEAN DATLTQQILW VLNNIAPADG DSNQRLTAAF  120
LCALVSRASR TGACKAVTAA VADAVESAAL HVHRFTAVEL ASFIDLTPWH RFGYTAANAA  180
IVEAVEGFPV VHIVDLGTTH CMQIPTLIDM LAGRAEGPPI LRLTVADVAP SAPPPALDMP  240
YEELGAKLVN FARSRNMSMD FRVVPTSPAD ALTSLVDQLR VQQLVSDGGE ALVVNCHMLL  300
HTVPDETAGS VSLTTAQPPV SLRTMLLKSL RALDPALVVV VDEDADFTAG DVVGRLRAAF  360
NFLWIPYDAV DTFLPKGSEQ RRWYEAEVGW KVENVLAQEG VERVERQEDR ARWGQRMRAA  420
GFRAAPFGEE AAGEVKAMLN DHAAGWGMKR EDDDLVLTWK GHNVVFASAW APS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-487747334421Protein SHORT-ROOT
5b3h_E2e-487747334421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037500.0AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05.
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645421.10.0scarecrow-like protein 32
SwissprotQ9SN221e-160SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A0E0EDU40.0A0A0E0EDU4_9ORYZ; Uncharacterized protein
STRINGOMERI07G17610.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-156GRAS family protein