PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G17320.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 199aa    MW: 20129.5 Da    PI: 8.1561
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G17320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000614466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F +   L  H  +H
  OMERI07G17320.1 44 FRCSLCGKAFASYQALGGHKASH 66
                     89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-124368IPR007087Zinc finger, C2H2
SMARTSM003550.0264466IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.1E-84466No hitNo description
PROSITE profilePS5015710.8664471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-8107134No hitNo description
PfamPF139122.3E-7111134IPR007087Zinc finger, C2H2
SMARTSM003554.6112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEQGGAADGG DLISLCLMAL AAAARGESTA LALALAPPPP ELHFRCSLCG KAFASYQALG  60
GHKASHRKPS AAAAAAPPAH RDVVVAAAPA SSGGGGADAD VASEADGRRR RHVCSLCRRG  120
FATGQALGGH KRFHYLHGPS VSATFSSAAT AASVGAAFDL NVAPIKEIAG EQRRCGEEAD  180
DDDEAESPSP AKKPRRRPG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1113010.0AK111301.1 Oryza sativa Japonica Group cDNA clone:002-181-B04, full insert sequence.
GenBankAP0037500.0AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646226.11e-67zinc finger protein 36-like
TrEMBLA0A0E0EDU81e-136A0A0E0EDU8_9ORYZ; Uncharacterized protein
STRINGOMERI07G17660.11e-137(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718