PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G17860.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 434aa    MW: 45988.2 Da    PI: 8.1562
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G17860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.8e-0691111323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C  Cgk Fs++ +L  H+r+H
  OMERI07G17860.1  91 CRECGKLFSSWRSLFGHMRRH 111
                      ********************9 PP
2zf-C2H214.40.00011293315123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp Cgk+F +   L  H  +H
  OMERI07G17860.1 293 YECPGCGKVFASYQALGGHRASH 315
                      99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.111335IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-51335IPR007087Zinc finger, C2H2
SuperFamilySSF576676.74E-101335No hitNo description
PROSITE profilePS5015710.4081335IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-41336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576676.74E-1084111No hitNo description
PROSITE profilePS5015710.1889112IPR007087Zinc finger, C2H2
SMARTSM003550.01489111IPR015880Zinc finger, C2H2-like
PfamPF139129.7E-590111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-491111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
PfamPF139122.4E-11292317IPR007087Zinc finger, C2H2
SMARTSM003550.05293315IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45293320IPR007087Zinc finger, C2H2
PROSITE patternPS000280295315IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDAVGVELSG VMHRCRVCGK GFSCGRSLGG HMRSHISFGE AAELGANGGV VGYGLRENPK  60
KTRRLSEFDG DGDGEEVEVE EGGGGGELRA CRECGKLFSS WRSLFGHMRR HASGGGVRDH  120
DDDDGDDVDV EDEFGGAEEE EEIVAPAAVT VIAAPPRRRR RSMRVAAPAP APPRPVLLGG  180
FEKEQEDVAL GLLMLSRDTG VWRSPVKAET FEKPEQKKKK ATAKQQPPPP LPRNGYGYGY  240
NSDEDSALLQ YGGGGGDVAK SRKRRASHYS PNSITSKKKQ QQRAAAPAKR TRYECPGCGK  300
VFASYQALGG HRASHKRINT SCSAPKVSPA AAAAAAAAPA PEPSSETYAS LSTLSPSASP  360
GSVAAGIGDR KANNKSSAEE KFGGACSSDE LYAELELEQR SPAAAARFLD LNFPPASSEG  420
LNHNKPMMIR AHSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361330.0CT836133.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646241.10.0uncharacterized protein LOC107278250
TrEMBLA0A0E0EE250.0A0A0E0EE25_9ORYZ; Uncharacterized protein
STRINGOMERI07G18140.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-15C2H2-like zinc finger protein