PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G20240.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 369aa MW: 40739.9 Da PI: 7.1212

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G20240.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	76.7	3.9e-24	58	116	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y OMERI07G20240.3 58 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 116 9*********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.8E-27	50	124	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.4E-41	54	136	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.36E-27	55	136	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	6.3E-15	58	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.5E-21	58	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.3E-15	96	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.3E-15	109	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MTNLKDRSRP GHKCSGPHVE MEKAMAFLVE RCGEMVVSME MGPHGGGAAA GKPVPAPFLT 60 KTYQLVDDPC TDHIVSWGED DTTFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYFANE 120 FFRKGAKHLL GEIHRRKSSQ PPPPPMPHQP YHHHHHHLNP FSLPPPPPAY HHHHLIQEEP 180 ATTTTAHCTV AGGDGGGEGG GAGDFLAALS EDNRQLRRRN SLLLSELAHM KKLYNDIIYF 240 LQNHVAPVTT TTPSSTAMAA AQAQHHLPAA ASCRLMELDS PDHSPPPPPP KTPTDGGDTV 300 KLFGVSLHGR KKRAHRDDDD GVHDQGSERG EDDDELARSI SSAQLMLLLD FLRRMTTTTI 360 DLRKGAGVN

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MTNLKDRSRP GHKCSGPHVE MEKAMAFLVE RCGEMVVSME MGPHGGGAAA GKPVPAPFLT  60
KTYQLVDDPC TDHIVSWGED DTTFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYFANE  120
FFRKGAKHLL GEIHRRKSSQ PPPPPMPHQP YHHHHHHLNP FSLPPPPPAY HHHHLIQEEP  180
ATTTTAHCTV AGGDGGGEGG GAGDFLAALS EDNRQLRRRN SLLLSELAHM KKLYNDIIYF  240
LQNHVAPVTT TTPSSTAMAA AQAQHHLPAA ASCRLMELDS PDHSPPPPPP KTPTDGGDTV  300
KLFGVSLHGR KKRAHRDDDD GVHDQGSERG EDDDELARSI SSAQLMLLLD FLRRMTTTTI  360
DLRKGAGVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-16	43	116	15	87	Heat shock factor protein 1
5d5v_B	2e-16	43	116	15	87	Heat shock factor protein 1
5d5v_D	2e-16	43	116	15	87	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645691.1	1e-153	heat stress transcription factor B-4b
Swissprot	Q7XHZ0	1e-154	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A0E0EF25	0.0	A0A0E0EF25_9ORYZ; Uncharacterized protein
STRING	OS07T0640900-02	1e-152	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	3e-48	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]