PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G23380.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 589aa    MW: 64939.7 Da    PI: 5.5884
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G23380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3504.64.8e-154784651354
                      XXXXXXXXXXXXXXXXXXXXXXX..XXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa...tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 
                      eel++rmw+d++++krlke ++q+ + +e+    +g +++++s+eqarrkkmsraQDgiLkYMlk+mevcnaqGfvYgiipekgkpv+gasd+L
  OMERI07G23380.1  78 EELERRMWRDRVRHKRLKELQEQSRAGRESRagnAGRQQQRQSQEQARRKKMSRAQDGILKYMLKMMEVCNAQGFVYGIIPEKGKPVSGASDNL 171
                      8******************99999888887777799999******************************************************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT CS
             EIN3  92 raWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg 185
                      r+WWkekv+fdrngpaai+kyqa+n++++++ +    + + +hsl+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWP+G+e+ww+e+g
  OMERI07G23380.1 172 RSWWKEKVRFDRNGPAAIAKYQADNAVPGSDGDAGGTAPAGPHSLHELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPEGTEAWWPEAG 265
                      *****************************999997779******************************************************** PP

                      --TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXXXXXXXX CS
             EIN3 186 lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqspkvtls 277
                      ++k+ g+ppykkphdlkkawkv+vLtavikhmsp+++++r+l+rqsk+lqdkm+ake  ++l+vl+qee+++ ++++   ++    ++ ++++s
  OMERI07G23380.1 266 VPKELGPPPYKKPHDLKKAWKVAVLTAVIKHMSPDVDKVRRLVRQSKCLQDKMTAKEIVTWLAVLKQEEDLYLKLHPGalPPP--LSAASFNAS 357
                      *****************************************************************************965444..4788999** PP

                      XXXXXXXX...XXXXXX.XXXXXXXXXX..............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.X CS
             EIN3 278 ceqkedve...gkkeskikhvqavktta..............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgse 338
                       + ++dve   g+++ + ++ q+ +t a                              ++++++kr  +p+   +  s+  ++tc + q+++s+
  OMERI07G23380.1 358 VSGEYDVEgvdGDEAGN-NNLQKAQTDAtafmdltttmdaalsnskflimplmkeeaiDVDFIQKRS-EPELMLSSDSHARVYTCGNVQCPHSN 449
                      ********653333333.4555555555999***********************************9.55555555666678************ PP

                      XXXXXXXXXXXXXXXX CS
             EIN3 339 telifadknsisqney 354
                      ++l+f d+n+++ ++y
  OMERI07G23380.1 450 YALGFLDRNERNAHQY 465
                      **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048738.0E-13078334No hitNo description
Gene3DG3DSA:1.10.3180.101.2E-70213342IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.4E-58214337IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MMGAAVTMVD RRMAFAAEAD VDSKAAFGFF GGECFVGEGD LVNPAPPPQQ QQQVHEGGFA  60
AEDESDGDDD DDDVDDIEEL ERRMWRDRVR HKRLKELQEQ SRAGRESRAG NAGRQQQRQS  120
QEQARRKKMS RAQDGILKYM LKMMEVCNAQ GFVYGIIPEK GKPVSGASDN LRSWWKEKVR  180
FDRNGPAAIA KYQADNAVPG SDGDAGGTAP AGPHSLHELQ DTTLGSLLSA LMQHCDPPQR  240
RFPLEKGVPP PWWPEGTEAW WPEAGVPKEL GPPPYKKPHD LKKAWKVAVL TAVIKHMSPD  300
VDKVRRLVRQ SKCLQDKMTA KEIVTWLAVL KQEEDLYLKL HPGALPPPLS AASFNASVSG  360
EYDVEGVDGD EAGNNNLQKA QTDATAFMDL TTTMDAALSN SKFLIMPLMK EEAIDVDFIQ  420
KRSEPELMLS SDSHARVYTC GNVQCPHSNY ALGFLDRNER NAHQYACKHN AAAAAAESKP  480
PPPHIFEPLG GFDFDLPVDG QRCLAGLMTT YDNDVAAATQ MHHHHHHQQQ QANFFIRDDA  540
PFGGDITATA AAPEFRFGSN FNVSGGGAVD YGGAMQQPPA KYVGSNWFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A5e-702113421132Protein ETHYLENE INSENSITIVE 3
4zds_B5e-702113421132Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512, PubMed:25995326). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Required for ethylene-promoted coleoptile elongation (PubMed:25995326). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:25995326}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and metyhl jasmonate. {ECO:0000269|PubMed:19798512}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646574.10.0ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ8W3L90.0EIL2_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 2
TrEMBLA0A0E0EGC00.0A0A0E0EGC0_9ORYZ; Uncharacterized protein
STRINGOMERI07G23870.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-141ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Yang C, et al.
    MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
    Plant Physiol., 2015. 169(1): p. 148-65
    [PMID:25995326]