PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G00070.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 488aa    MW: 50564.3 Da    PI: 4.5209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G00070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07371397227
                      -S---SGGGGTS.--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaHgp 27 
                      kt+lC  ++  G  C++G +Ck+aHg+
  OMERI08G00070.1 371 KTKLCVEYYSRGlGCPRGTTCKYAHGE 397
                      7888877777788************96 PP
2zf-CCCH26.41.2e-08432458127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC++f  +G C + ++C+FaHg+
  OMERI08G00070.1 432 YKTKLCKTFTSGGLCLFAANCRFAHGE 458
                      9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0062369397IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6369402IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31369398IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5371397IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-10371401IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-12430461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-8431461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202431459IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6431458IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5432458IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.587461488IPR000571Zinc finger, CCCH-type
SMARTSM003560.15461488IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5462487IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MADSEDGDHA ATTTTTTTEQ RYDDDGHLVP SSGGQEEEGS GGRDVVVPGG HVAEDHCSGV  60
GVPVGRDAGG ATSSSPQPVH VTPSILVGSI HAPVFQGELV SMKFGVGSGS MGAGTSATRR  120
LPATGFGALP TSSMAEDSAD HADDDHLAEE EEEEEAQHYI DDGHLVPSGG GQEEEGSGGR  180
HGGEEDHPDD LVADLDLDLL VDGVVGPVPG GHLNADAAAF VPTTRGRQDL YSALSSSTPA  240
AGYRHYITSS ALAEAGHVSP FLGLPYATAF DSPLDRELVS PSSAPPPGSA ASHAWLVRCS  300
SPLSDSEWTR RSILAREAAH SPASTVTGRF EFVPIPGAPY APPPSFAPIA AGAGPAARPL  360
QQLAFRLGEH KTKLCVEYYS RGLGCPRGTT CKYAHGEDDL RLVVAVSSLA DAGEDSSSSD  420
SSSAALGGED KYKTKLCKTF TSGGLCLFAA NCRFAHGEVE LGKEEPCWFF FSGQTCPRGD  480
TCGFRHSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882954.10.0putative zinc finger CCCH domain-containing protein 48
SwissprotQ8GVZ80.0C3H48_ORYSJ; Putative zinc finger CCCH domain-containing protein 48
TrEMBLA0A0E0EGL10.0A0A0E0EGL1_9ORYZ; Uncharacterized protein
STRINGOMERI08G00050.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173811111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-08C3H family protein