PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G00360.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 265aa MW: 29232 Da PI: 7.0823

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G00360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	101	145	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++d+ +qlG+g+W+ I++ + + Rt+ q+ s+ qky OMERI08G00360.1 101 PWTEEEHKKFLDGLRQLGKGDWRGISKNFVTSRTATQVASHAQKY 145 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.531	94	150	IPR017930	Myb domain
SuperFamily	SSF46689	6.46E-18	95	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-18	97	149	IPR006447	Myb domain, plants
SMART	SM00717	1.9E-11	98	148	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-12	98	144	IPR009057	Homeodomain-like
CDD	cd00167	2.04E-10	101	146	No hit	No description
Pfam	PF00249	1.3E-12	101	145	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEQHEEAAER KPSPPVIFRL FGVEVRGGGG GGVDEEEYEE EEVEGGLLIK KSSSMPNLTS 60 IDPLPVPADG GKRRASDDSE LASGQQKRRR RKVQERKKGV PWTEEEHKKF LDGLRQLGKG 120 DWRGISKNFV TSRTATQVAS HAQKYFLRQT NPGKKKRRAS LFDVVAESSD DQLPSPQSVG 180 IKPPTQEIVH TDRGDVPILS YPVARGFRGD NVQVDELTEY VKRLKAAEDM SLSMISGLEM 240 ASSSISSLEL SIAPPHCAIE AIKVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	91	KRRASDDSELASGQQKRRRRK
2	86	91	KRRRRK
3	86	97	KRRRRKVQERKK
4	87	97	RRRRKVQERKK
5	153	157	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK288986	0.0	AK288986.1 Oryza sativa Japonica Group cDNA, clone: J090086G02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612867.1	1e-155	transcription factor MYBS2
Swissprot	B8BI93	1e-156	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	1e-156	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A0E0EGP3	0.0	A0A0E0EGP3_9ORYZ; Uncharacterized protein
STRING	OMERI08G00360.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	2e-31	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]