PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G02310.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 792aa    MW: 85292 Da    PI: 6.5096
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G02310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.4e-21122177156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  OMERI08G02310.1 122 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 177
                      688999***********************************************999 PP
2START202.71.5e-632985221206
                      HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      ela +a++elv++a+++ep+W      e + ++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW+  +     +a+tle
  OMERI08G02310.1 298 ELAVAAMEELVRMAQLGEPLWAPALggEALGEEEYARTFPRGLGpkspeLRSEASRETAVVIMNHVSLVEMLMDVG-QWTALFSsivsRAATLE 390
                      57899********************99999*********998889*******************************.99999999999****** PP

                      EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EE.SSEEEEEEEECTCEEEEEEEE CS
            START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRael.lpSgiliepksnghskvtwve 168
                      v+s+g      galqlm+ae+q++splvp R+  f+Ry++q+++g+w++vdvS+d  +     ++  +R+++ +pSg+li++++ng+skvtwve
  OMERI08G02310.1 391 VLSTGvagnhnGALQLMSAEFQMPSPLVPtRETQFLRYCKQHPDGTWAVVDVSLDGLRAGGGcQPAAARGHRrRPSGCLIQEMPNGYSKVTWVE 484
                      ************************************************************99********8537******************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      hv+ +++++h+l++++v+sg+a+ga++wvatl+rqce+
  OMERI08G02310.1 485 HVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCER 522
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-23108177IPR009057Homeodomain-like
SuperFamilySSF466892.55E-20109179IPR009057Homeodomain-like
PROSITE profilePS5007117.394119179IPR001356Homeobox domain
SMARTSM003891.1E-20120183IPR001356Homeobox domain
CDDcd000867.57E-20121180No hitNo description
PfamPF000462.4E-18122177IPR001356Homeobox domain
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
PROSITE profilePS5084843.201289525IPR002913START domain
SuperFamilySSF559614.23E-34290524No hitNo description
CDDcd088751.89E-120293521No hitNo description
SMARTSM002341.3E-59298522IPR002913START domain
PfamPF018523.0E-53299522IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-5364521IPR023393START-like domain
SuperFamilySSF559615.5E-26542765No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MMIPGRNMSP AMIGRPNGGG GVAYASSSSA LSLGQSLLDG HHHQLPSLLQ QHHNGHHLLD  60
QHQQHQHQLP PQATTTSESD ARAPRDELEM SKSGGSDNLE SGGGGGGGGS GDDQDPNQRP  120
RKKRYHRHTQ HQIQELEAFF KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKTQH  180
ERHENNALRA ENEKLRAENM RYKEALANAS CPNCGGPAAI GEMSFDEHHL RLENARLRDE  240
IDRISAIAAK YVGKPAAAVS AAYPPLPPSN RSPLDHMGMP GAGADVFGAD FDKPLVIELA  300
VAAMEELVRM AQLGEPLWAP ALGGEALGEE EYARTFPRGL GPKSPELRSE ASRETAVVIM  360
NHVSLVEMLM DVGQWTALFS SIVSRAATLE VLSTGVAGNH NGALQLMSAE FQMPSPLVPT  420
RETQFLRYCK QHPDGTWAVV DVSLDGLRAG GGCQPAAARG HRRRPSGCLI QEMPNGYSKV  480
TWVEHVEADD QMVHNLYKPV VNSGMAFGAR RWVATLERQC ERLASAMASN VASSGDAGVI  540
TTSEGRRSML KLAERMVASF CGGVTASTTH QWTTLSGSGA EDVRVMTRKS VDDPGRPPGI  600
ILNAATSFWL PVPPSRVFDF LRDDSTRSEW DILSNGGVVQ EMAHIANGRD HGNAVSLLRV  660
NNANSNQSNM LILQECCTDA TGSYVIYAPV DVVAMNVVLN GGDPDYVALL PSGFAILPDG  720
PDGGGGSLLT VAFQILVDSV PTAKLSLGSV ATVNSLIACT VERIKAAITG DNGVAPPCPR  780
RSREGSRANS EV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185630.0AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648539.10.0homeobox-leucine zipper protein ROC7
SwissprotA2YR020.0ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLA0A0E0EHM30.0A0A0E0EHM3_9ORYZ; Uncharacterized protein
STRINGOMERI08G02370.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein