PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G02700.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 387aa    MW: 40556.6 Da    PI: 8.9696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G02700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.91e-12108152347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+++++ +  +lG+g+W+ I+r     Rt+ q+ s+ qky
  OMERI08G02700.1 108 AWSEEEHKKFLLGLSKLGKGDWRGISRNYVGSRTPTQVASHAQKY 152
                      7**************************9988*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.8E-42342IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.6972439IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.049101157IPR017930Myb domain
SuperFamilySSF466895.15E-16103158IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-16104156IPR006447Myb domain, plants
SMARTSM007177.5E-10105155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-9107151IPR009057Homeodomain-like
PfamPF002491.2E-10108152IPR001005SANT/Myb domain
CDDcd001672.51E-9108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MTRDGAPPTA ASGGGGGGAA EGPRRCSQCG HHGHNARTCT ARGPVKLFGV RIGDKPPTAA  60
AGGGGGMRKS ASMGSLAQLA EGSGGGGGRE EGYGSDGNDD KRRKRGEAWS EEEHKKFLLG  120
LSKLGKGDWR GISRNYVGSR TPTQVASHAQ KYFIRQTNVH RRKRRSSLFD MVIDDSDDQP  180
LSRTSSQEVE VEENLEDGHP VTAPVIPPAP VPMLSSSLVP PPVPAMAPVA PGPMLTSASA  240
TLPVSAVAPQ TDEKEQVASG SNTTEPGAAI PEVMPPYGYP MMLPPYYPPA FVPMPYYGYV  300
PVFYAPPGAV QAQHEVVKPV AVHSKPPVHI DELYSMSELS LKGEASVKNG TPNSPLPPRP  360
IGRPDRQSAF HGKGPSDGSS NGLIPAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736810.0AK073681.1 Oryza sativa Japonica Group cDNA clone:J033054K18, full insert sequence.
GenBankEU8372520.0EU837252.1 Oryza sativa Japonica Group clone KCB704E08 myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651035.10.0transcription factor MYBS3-like
TrEMBLA0A0E0EHS30.0A0A0E0EHS3_9ORYZ; Uncharacterized protein
STRINGOMERI08G02750.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-41MYB_related family protein