PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G03610.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 322aa    MW: 33495.3 Da    PI: 6.9551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G03610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.91.9e-07260303243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g+W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  OMERI08G03610.1 260 GSWSAGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 303
                      79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.066167220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-5169204IPR009057Homeodomain-like
SuperFamilySSF466893.59E-7169212IPR009057Homeodomain-like
PROSITE profilePS500905.877169210IPR017877Myb-like domain
CDDcd001675.52E-5170212No hitNo description
PfamPF139215.4E-5171211No hitNo description
SMARTSM007176.1E-7258310IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-10258308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-6260307IPR009057Homeodomain-like
PROSITE profilePS500906.922260308IPR017877Myb-like domain
PfamPF002491.1E-6260303IPR001005SANT/Myb domain
CDDcd001672.37E-5266308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEFIDDDWDY QPRARVIHSR SNANSTGATT ASSSQPSRSL PHAAACAAAA VALLAAAYYL  60
LPDYQVLASF VVWVASSLLL APFAPSSATG GDVSVGRGDP LPEQEPVEEP AADPAPTSRR  120
GRRQSSNLTP TPPPPKPSDP IAPPPPRHAA VAAAATAVSD GGEAVEDAGE WTDQEMDILR  180
RQMVKHPAGE PQRWEKIAAA FGGRRTPESV IRAAKSGGGA AAAGASFDQF LRKRKPLDPR  240
AEAADAGGGN AGGGGESGDG SWSAGDDRAL LNALKEFPKD TAMRWEKVAA AVPGKTKAAC  300
MKRVTELKRD FRSSKAASEA AP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235LRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659147.11e-149PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0E0EI600.0A0A0E0EI60_9ORYZ; Uncharacterized protein
STRINGOMERI08G03580.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-41MYB_related family protein