PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G05600.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 206aa    MW: 22172 Da    PI: 4.2932
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G05600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY38.81.8e-1263117258
                      --SS-EEEEEEE--TT-SS-..EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefp..rsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy Wr  Gq + +g   p   s Y+C++a+C v+k v  +a     ve+ Y+g+Hnh
  OMERI08G05600.1  63 DDGYYWRMTGQSTTQGESSPtiLSHYQCAQANCVVQKTVAYTA----DVETFYRGRHNH 117
                      8**************987773369***************9988....5899******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.7E-1162117IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-1162117IPR003657WRKY domain
SMARTSM007743.9E-462119IPR003657WRKY domain
PROSITE profilePS5081110.31563117IPR003657WRKY domain
PfamPF031062.7E-1063117IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MENQSGQPQY TMADQGFRPF SALMSAPSTA QQHVGSSFST AVVQVAAAQQ SHTDHGNICL  60
ADDDGYYWRM TGQSTTQGES SPTILSHYQC AQANCVVQKT VAYTADVETF YRGRHNHLRQ  120
SDRLEPMSQV GVLVEASDAA GAAAGPSVPE TENGDDQSSG SSDRNEDDAG DVEMDEDAAA  180
GDPNAMQRRK LKSKRLEMEP ATYADI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0054990.0AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649913.11e-138zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2
TrEMBLA0A0E0EIY11e-152A0A0E0EIY1_9ORYZ; Uncharacterized protein
STRINGORGLA08G0050000.11e-59(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.12e-09WRKY DNA-binding protein 4