PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G05700.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 243aa    MW: 26893.6 Da    PI: 9.5694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G05700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.61.3e-322210854129
              NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...........kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + kewyfFs rd+kyatg+r+nrat+sgyWkatgkd++++++             ++vg++ktLvfy+grapkg+kt+Wvmhe+rle
  OMERI08G05700.1  22 GGKEWYFFSLRDRKYATGHRTNRATRSGYWKATGKDRSITRRpisgepsssaaAASAVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 108
                      679**************************************9998777665555555***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.7351126IPR003441NAC domain
SuperFamilySSF1019413.27E-3714126IPR003441NAC domain
PfamPF023659.4E-1625107IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAALSAAIVD RFNLVADAAC VGGKEWYFFS LRDRKYATGH RTNRATRSGY WKATGKDRSI  60
TRRPISGEPS SSAAAASAVG MRKTLVFYRG RAPKGRKTEW VMHEFRLEPQ PLHLKEDWVL  120
CRVFYKTRQT IPSPSSEEAI TLPNELDLPA TPSLPPLIDA YITFDSAPTT TPSMVGSYEQ  180
VSCFSGLPAL PMKGSISFGD LLAMDTSAEK KAIRVLHNSN TAKLEFSPDW GQESGLSQMW  240
NPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-291412661165NO APICAL MERISTEM PROTEIN
1ut4_B8e-291412661165NO APICAL MERISTEM PROTEIN
1ut7_A8e-291412661165NO APICAL MERISTEM PROTEIN
1ut7_B8e-291412661165NO APICAL MERISTEM PROTEIN
3swm_A9e-291412664168NAC domain-containing protein 19
3swm_B9e-291412664168NAC domain-containing protein 19
3swm_C9e-291412664168NAC domain-containing protein 19
3swm_D9e-291412664168NAC domain-containing protein 19
3swp_A9e-291412664168NAC domain-containing protein 19
3swp_B9e-291412664168NAC domain-containing protein 19
3swp_C9e-291412664168NAC domain-containing protein 19
3swp_D9e-291412664168NAC domain-containing protein 19
4dul_A8e-291412661165NAC domain-containing protein 19
4dul_B8e-291412661165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201970.0AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648318.11e-147NAC domain-containing protein 21/22 isoform X1
RefseqXP_015648319.11e-148NAC domain-containing protein 21/22 isoform X2
SwissprotQ84TE61e-53NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0EIZ30.0A0A0E0EIZ3_9ORYZ; Uncharacterized protein
STRINGOMERI08G05710.11e-168(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.13e-56NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]