PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G08450.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 228aa    MW: 24104.5 Da    PI: 8.4985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G08450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-053455223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ C++ Fs+    +rH+r+H
  OMERI08G08450.1 34 PCHLCSREFSSMKAVHRHMRVH 55
                     6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.443355IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9283360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SMARTSM0035531084106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.95E-5127155No hitNo description
PROSITE profilePS501578.767130157IPR007087Zinc finger, C2H2
SMARTSM003555.6130152IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-7130154IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLPSSTPSSS GSEGTISDHG GSDAAPVLRL EASPCHLCSR EFSSMKAVHR HMRVHQAENE  60
KGARWRRFIP WLGYPEHHNH VDHTGYEGCG MEYKTHKGMG GHVASHIKRD KLGAAAGGGG  120
VGVSKPEGKH PCNACGKEYL TGVALGGHKR KHYKKYLDLT LSLAPPEQLL APPTLAPALA  180
AIAATAALPP AETAAEVAKH GNGAEIVSAP PSIIMRIFGI DVEKPLDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882681.13e-59zinc finger protein squeeze-like
TrEMBLA0A0E0EK101e-165A0A0E0EK10_9ORYZ; Uncharacterized protein
STRINGOMERI08G08310.11e-166(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.11e-07zinc-finger protein 3