PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G10300.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 396aa    MW: 43923.2 Da    PI: 8.8727
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G10300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR37.74.1e-12215253342
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  OMERI08G10300.1 215 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 253
                      789************************.********9875 PP
2TCR39.31.3e-12296334139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      k++kgC+Ck+++ lkkYCeCf+a ++Cse+C+C++Ck  
  OMERI08G10300.1 296 KHTKGCKCKRTEYLKKYCECFKASVFCSENCRCTGCKSF 334
                      589*********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-7213253IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.419214336IPR005172CRC domain
PfamPF036382.9E-8216250IPR005172CRC domain
SMARTSM011145.0E-10296337IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-9299333IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MRVWCELGIK IVLQASMERH YYIDTRPMFQ GNTEKVFNSA PEWDLGTGGK WRSRYSFVQV  60
KIDFASSLYA AKADIAATAA ALSHALGPPC YQLPLAKVNS SLPLWPPVTC PSTFAQKRRM  120
SLPSPPPAKK LQVQQSSSIL PQDFPKLEVL PVEKPTKLQE RRSPQHVSPE LKQGSPKMER  180
PLLPRPATFI DVMLSSQKPS SDMWSETKDV TLTRKTNCSC KYSKCLKLYC ECFEKGRYCI  240
GCNCTNCCNN VNHENARHDA INVALERNPA AFMPKVSNST AHNCESKAAE GDIVGKHTKG  300
CKCKRTEYLK KYCECFKASV FCSENCRCTG CKSFKSNEDR ISQKNTVHAH NVQNPASSGM  360
VGQSVIIFHA AENDSSLSLA ASVSDHSINN NTSHGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-2421834014127Protein lin-54 homolog
5fd3_B9e-2421834014127Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648875.10.0protein tesmin/TSO1-like CXC 6
TrEMBLA0A0E0EKT90.0A0A0E0EKT9_9ORYZ; Uncharacterized protein
STRINGOMERI08G10040.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.24e-38Tesmin/TSO1-like CXC domain-containing protein