PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G10300.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 382aa    MW: 42457.5 Da    PI: 8.8037
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G10300.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR37.83.9e-12201239342
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  OMERI08G10300.2 201 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 239
                      789************************.********9875 PP
2TCR39.31.3e-12282320139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      k++kgC+Ck+++ lkkYCeCf+a ++Cse+C+C++Ck  
  OMERI08G10300.2 282 KHTKGCKCKRTEYLKKYCECFKASVFCSENCRCTGCKSF 320
                      589*********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-7199239IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.419200322IPR005172CRC domain
PfamPF036382.8E-8202236IPR005172CRC domain
SMARTSM011145.0E-10282323IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-9285319IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MRVWCELGIK IVLQASMERH YYIDTRPMFQ GNTEKVFNSA PEWDLGTGGK WRSRYSFVQD  60
IAATAAALSH ALGPPCYQLP LAKVNSSLPL WPPVTCPSTF AQKRRMSLPS PPPAKKLQVQ  120
QSSSILPQDF PKLEVLPVEK PTKLQERRSP QHVSPELKQG SPKMERPLLP RPATFIDVML  180
SSQKPSSDMW SETKDVTLTR KTNCSCKYSK CLKLYCECFE KGRYCIGCNC TNCCNNVNHE  240
NARHDAINVA LERNPAAFMP KVSNSTAHNC ESKAAEGDIV GKHTKGCKCK RTEYLKKYCE  300
CFKASVFCSE NCRCTGCKSF KSNEDRISQK NTVHAHNVQN PASSGMVGQS VIIFHAAEND  360
SSLSLAASVS DHSINNNTSH GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-2420432614127Protein lin-54 homolog
5fd3_B7e-2420432614127Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648875.10.0protein tesmin/TSO1-like CXC 6
TrEMBLA0A0E0EKU00.0A0A0E0EKU0_9ORYZ; Uncharacterized protein
STRINGOMERI08G10040.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.14e-38Tesmin/TSO1-like CXC domain-containing protein